Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21281 * 119.99954 * 2 1 4 4 N 1.34776 * 119.99882 * 180.02562 * 2 1 3 5 5 C 1.46479 * 124.88016 * 354.92024 * 4 2 1 6 6 C 1.53734 * 105.28028 * 180.02562 * 5 4 2 7 7 C 1.51279 * 104.49703 * 359.79524 * 6 5 4 8 8 C 1.36430 * 130.78464 * 179.59125 * 7 6 5 9 9 C 1.40804 * 119.95820 * 180.32810 * 8 7 6 10 10 C 1.41108 * 120.34976 * 180.27147 * 9 8 7 11 11 H 1.07994 * 120.00561 * 209.63102 * 10 9 8 12 12 C 1.39902 * 119.99482 * 29.62966 * 10 9 8 13 13 N 1.30884 * 120.00129 * 9.96764 * 12 10 9 14 14 Si 1.86805 * 119.99798 * 189.96700 * 12 10 9 15 15 H 1.48492 * 109.46941 * 60.00108 * 14 12 10 16 16 H 1.48505 * 109.47108 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47210 * 300.00089 * 14 12 10 18 18 C 1.41026 * 119.30704 * 0.25081 * 9 8 7 19 19 Cl 1.73589 * 120.02507 * 179.97438 * 18 9 8 20 20 C 1.36220 * 119.94458 * 0.02562 * 18 9 8 21 21 C 1.39228 * 124.88116 * 174.95107 * 4 2 1 22 22 H 1.09002 * 109.46792 * 274.74500 * 1 2 3 23 23 H 1.09001 * 109.46662 * 34.74313 * 1 2 3 24 24 H 1.08990 * 109.47060 * 154.74293 * 1 2 3 25 25 H 1.09001 * 110.28402 * 298.97604 * 5 4 2 26 26 H 1.08998 * 110.28093 * 61.07511 * 5 4 2 27 27 H 1.08995 * 110.42863 * 118.75306 * 6 5 4 28 28 H 1.08998 * 110.42737 * 241.12956 * 6 5 4 29 29 H 1.08001 * 120.02405 * 0.59969 * 8 7 6 30 30 H 0.97009 * 119.99882 * 184.99122 * 13 12 10 31 31 H 1.08002 * 119.69258 * 180.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5632 -2.4911 0.1053 6 6 2.7322 -3.4885 0.0598 7 6 3.9644 -2.6217 -0.0781 8 6 5.2846 -2.9560 -0.1592 9 6 6.2594 -1.9469 -0.2783 10 6 7.6267 -2.2836 -0.3685 11 1 8.3763 -1.6036 0.0082 12 6 8.0113 -3.4984 -0.9461 13 7 7.1290 -4.2321 -1.5757 14 14 9.7841 -4.0733 -0.8188 15 1 10.1544 -4.2229 0.6114 16 1 9.9313 -5.3804 -1.5081 17 1 10.6760 -3.0734 -1.4591 18 6 5.8548 -0.5963 -0.3070 19 17 7.0409 0.6628 -0.4527 20 6 4.5326 -0.2805 -0.2192 21 6 3.5643 -1.2879 -0.1011 22 1 -0.3633 0.0850 1.0242 23 1 -0.3633 0.8445 -0.5857 24 1 -0.3633 -0.9293 -0.4384 25 1 1.0249 -2.5827 1.0487 26 1 0.8885 -2.6614 -0.7337 27 1 2.7729 -4.0692 0.9813 28 1 2.6352 -4.1494 -0.8015 29 1 5.5816 -3.9941 -0.1364 30 1 7.3777 -5.1069 -1.9131 31 1 4.2273 0.7553 -0.2420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216945707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -40.534403 kcal Electronic energy + Delta-G solvation = -17564.507227 eV Core-core repulsion = 14642.400298 eV Total energy + Delta-G solvation = -2922.106929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.73355 -39.43883 -37.75726 -36.64098 -35.10412 -33.04855 -31.74154 -30.09298 -29.50983 -26.87834 -24.12894 -23.62204 -21.82051 -20.37078 -19.09732 -18.06795 -17.37851 -17.13763 -16.83009 -15.63509 -15.58007 -15.35816 -15.17137 -14.36935 -14.02840 -13.74198 -13.64649 -13.31434 -13.18839 -13.13219 -12.92934 -12.77528 -12.72062 -12.31890 -12.16503 -11.94561 -11.60860 -11.37544 -11.18380 -10.74145 -10.40972 -9.32280 -8.75002 -8.50778 -6.29213 0.63459 0.86469 1.41221 1.44365 1.51660 1.68408 1.80375 2.20523 2.24230 2.69943 3.51126 3.61920 3.81175 4.09748 4.31761 4.43163 4.50866 4.64742 4.67656 4.74255 4.94052 5.05439 5.12706 5.14927 5.16989 5.26985 5.45181 5.68214 5.86322 5.95762 6.21195 6.51915 6.71019 6.81183 6.87092 7.20821 8.33395 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.006685 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.292087 B = 4187.489830 C = 5194.889068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.491 3.509 3 O -0.597 6.597 4 N -0.543 5.543 5 C 0.105 3.895 6 C -0.081 4.081 7 C -0.109 4.109 8 C -0.132 4.132 9 C 0.082 3.918 10 C -0.474 4.474 11 H 0.077 0.923 12 C 0.040 3.960 13 N -0.822 5.822 14 Si 0.979 3.021 15 H -0.259 1.259 16 H -0.263 1.263 17 H -0.267 1.267 18 C -0.135 4.135 19 Cl -0.104 7.104 20 C -0.103 4.103 21 C 0.006 3.994 22 H 0.115 0.885 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.291 0.709 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 -3.635 2.433 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.284 3.716 3 O -0.478 6.478 4 N -0.267 5.267 5 C -0.016 4.016 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.152 4.152 9 C 0.079 3.921 10 C -0.503 4.503 11 H 0.095 0.905 12 C -0.175 4.175 13 N -0.449 5.449 14 Si 0.800 3.200 15 H -0.183 1.183 16 H -0.187 1.187 17 H -0.192 1.192 18 C -0.163 4.163 19 Cl -0.076 7.076 20 C -0.124 4.124 21 C -0.088 4.088 22 H 0.134 0.866 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.987 -3.115 2.226 11.635 hybrid contribution 1.320 0.308 -0.154 1.364 sum -9.667 -2.806 2.072 10.277 Atomic orbital electron populations 1.21885 0.86074 1.06548 1.06500 1.21875 0.92857 0.81334 0.75538 1.90646 1.72195 1.32796 1.52201 1.45758 1.04165 1.08447 1.68327 1.22398 0.95883 0.78375 1.04903 1.21166 0.89264 0.96926 1.04414 1.20071 0.95231 0.93237 1.02614 1.20337 0.90163 0.99445 1.05250 1.17695 0.95067 0.88923 0.90421 1.19651 0.92312 1.03823 1.34550 0.90483 1.26618 1.03949 0.95540 0.91400 1.69803 1.38160 1.10816 1.26100 0.85288 0.76853 0.78129 0.79738 1.18319 1.18746 1.19201 1.20435 0.88355 0.89020 1.18510 1.98186 1.59503 1.52794 1.97130 1.19968 0.90649 0.98229 1.03545 1.17890 0.83968 0.93775 1.13182 0.86649 0.88402 0.87107 0.87197 0.87292 0.88004 0.88518 0.85794 0.89785 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.93 71.24 0.71 -2.05 16 2 C 0.49 16.59 7.89 87.66 0.69 17.28 16 3 O -0.60 -26.68 15.22 -3.03 -0.05 -26.72 16 4 N -0.54 -18.85 3.11 -628.97 -1.96 -20.80 16 5 C 0.10 2.36 6.34 86.63 0.55 2.91 16 6 C -0.08 -2.28 6.94 30.28 0.21 -2.07 16 7 C -0.11 -4.66 6.17 -19.85 -0.12 -4.78 16 8 C -0.13 -6.54 8.60 22.48 0.19 -6.35 16 9 C 0.08 4.45 5.54 -21.26 -0.12 4.33 16 10 C -0.47 -25.26 8.45 23.38 0.20 -25.06 16 11 H 0.08 4.09 7.21 -2.91 -0.02 4.07 16 12 C 0.04 1.95 5.26 85.24 0.45 2.40 16 13 N -0.82 -40.73 10.86 21.82 0.24 -40.49 16 14 Si 0.98 37.64 29.57 68.60 2.03 39.67 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 17 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 18 C -0.14 -7.13 6.33 22.48 0.14 -6.99 16 19 Cl -0.10 -5.05 27.65 -2.72 -0.08 -5.12 16 20 C -0.10 -5.25 9.15 22.28 0.20 -5.05 16 21 C 0.01 0.27 6.64 38.70 0.26 0.53 16 22 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.11 1.29 6.88 -2.39 -0.02 1.27 16 25 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 1.72 7.65 -2.39 -0.02 1.70 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.12 6.21 6.26 -2.91 -0.02 6.19 16 30 H 0.29 12.97 8.30 -92.70 -0.77 12.20 16 31 H 0.10 5.59 6.24 -2.91 -0.02 5.57 16 Total: -1.00 -69.59 278.22 4.71 -64.88 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.16 Total: 13.50 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.36 Total: -24.90 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.72 Total: -61.30 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -0.08 Total: -5.12 kcal Total: -69.59 4.71 -64.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216945707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.344 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds