Wall clock time and date at job start Mon Mar 30 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35361 * 120.00497 * 2 1 4 4 C 1.41295 * 119.99819 * 352.56348 * 3 2 1 5 5 O 1.21842 * 120.00147 * 353.95110 * 4 3 2 6 6 C 1.47902 * 120.00147 * 173.95403 * 4 3 2 7 7 C 1.39615 * 120.13202 * 179.97438 * 6 4 3 8 8 C 1.37888 * 119.86851 * 179.97438 * 7 6 4 9 9 C 1.38520 * 120.13026 * 0.28344 * 8 7 6 10 10 Cl 1.73607 * 119.86596 * 179.70201 * 9 8 7 11 11 C 1.38524 * 120.26289 * 359.43818 * 9 8 7 12 12 C 1.37887 * 120.13049 * 0.56161 * 11 9 8 13 13 N 1.36500 * 119.99643 * 180.02562 * 2 1 3 14 14 C 1.36502 * 119.99986 * 359.97438 * 13 2 1 15 15 H 1.08003 * 120.00481 * 0.02562 * 14 13 2 16 16 C 1.39147 * 119.99935 * 180.02562 * 14 13 2 17 17 N 1.31305 * 119.99720 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46933 * 90.00039 * 18 16 14 20 20 H 1.48500 * 109.47130 * 209.99652 * 18 16 14 21 21 H 1.48499 * 109.47334 * 330.00181 * 18 16 14 22 22 H 1.08993 * 109.47131 * 84.52266 * 1 2 3 23 23 H 1.08996 * 109.47309 * 204.52759 * 1 2 3 24 24 H 1.09000 * 109.46727 * 324.52198 * 1 2 3 25 25 H 1.08005 * 120.00483 * 172.56054 * 3 2 1 26 26 H 1.08000 * 120.06560 * 359.96097 * 7 6 4 27 27 H 1.07999 * 119.93421 * 179.97438 * 8 7 6 28 28 H 1.08004 * 119.93525 * 180.25992 * 11 9 8 29 29 H 1.07999 * 120.06784 * 179.70165 * 12 11 9 30 30 H 0.97002 * 119.99939 * 180.02562 * 13 2 1 31 31 H 0.96997 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1839 1.1722 0.0000 4 6 1.4864 2.3907 -0.1584 5 8 0.2932 2.3822 -0.4048 6 6 2.2047 3.6767 -0.0251 7 6 1.5183 4.8824 -0.1816 8 6 2.1932 6.0782 -0.0556 9 6 3.5507 6.0848 0.2198 10 17 4.3953 7.5942 0.3693 11 6 4.2360 4.8918 0.3818 12 6 3.5718 3.6898 0.2581 13 7 2.1894 -1.1822 -0.0005 14 6 1.5068 -2.3643 -0.0005 15 1 0.4268 -2.3643 -0.0005 16 6 2.2025 -3.5694 -0.0005 17 7 3.5155 -3.5694 -0.0010 18 14 1.2684 -5.1870 0.0002 19 1 1.0203 -5.6159 -1.3997 20 1 2.0712 -6.2218 0.7001 21 1 -0.0289 -5.0092 0.7006 22 1 -0.3633 0.0981 -1.0229 23 1 -0.3634 -0.9349 0.4266 24 1 -0.3633 0.8369 0.5965 25 1 3.2571 1.1761 0.1211 26 1 0.4608 4.8784 -0.4010 27 1 1.6634 7.0114 -0.1769 28 1 5.2936 4.9032 0.6006 29 1 4.1081 2.7603 0.3799 30 1 3.1594 -1.1822 -0.0002 31 1 4.0004 -4.4094 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221964997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:15 Heat of formation + Delta-G solvation = -12.054082 kcal Electronic energy + Delta-G solvation = -16539.952247 eV Core-core repulsion = 13619.080318 eV Total energy + Delta-G solvation = -2920.871930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41396 -37.97564 -36.68035 -36.14918 -32.99341 -31.21409 -30.65310 -29.71183 -27.28360 -25.30088 -23.12336 -22.43939 -20.25528 -18.52834 -17.91112 -17.04512 -15.78218 -15.23484 -15.09882 -14.60717 -14.24682 -13.87514 -13.59315 -13.31707 -13.22265 -12.96837 -12.36982 -11.99060 -11.87280 -11.53785 -11.49091 -11.37762 -11.11944 -11.03536 -10.72224 -10.64511 -10.62324 -10.08770 -9.14780 -8.89956 -8.47149 -8.26643 -7.10201 -6.99529 -4.18643 1.00732 1.48769 2.15540 2.50361 2.97346 2.99409 3.01529 3.67863 3.75816 4.55202 4.84215 4.87146 4.96457 4.99780 5.26389 5.53854 5.56472 5.80912 6.00132 6.12001 6.30391 6.34994 6.48363 6.60595 6.67192 6.84755 6.94492 7.01966 7.09597 7.17501 7.46679 7.79357 8.34435 8.97110 9.06378 9.15368 10.14157 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.003442 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.877682 B = 8132.552348 C = 8718.145250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.230 3.770 3 C -0.484 4.484 4 C 0.410 3.590 5 O -0.550 6.550 6 C -0.112 4.112 7 C -0.073 4.073 8 C -0.124 4.124 9 C -0.032 4.032 10 Cl -0.085 7.085 11 C -0.125 4.125 12 C -0.074 4.074 13 N -0.491 5.491 14 C -0.330 4.330 15 H 0.114 0.886 16 C 0.033 3.967 17 N -0.867 5.867 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.263 1.263 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.404 0.596 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 10.536 0.917 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 C -0.514 4.514 4 C 0.306 3.694 5 O -0.441 6.441 6 C -0.114 4.114 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.059 4.059 10 Cl -0.056 7.056 11 C -0.143 4.143 12 C -0.092 4.092 13 N -0.087 5.087 14 C -0.460 4.460 15 H 0.132 0.868 16 C -0.175 4.175 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.240 0.760 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.532 10.196 0.822 10.243 hybrid contribution 0.655 -0.572 0.061 0.872 sum 1.187 9.624 0.883 9.737 Atomic orbital electron populations 1.21024 0.90504 1.01868 1.02928 1.20150 0.93775 0.85517 0.91168 1.20043 0.98717 0.91914 1.40731 1.17998 0.87468 0.86863 0.77038 1.90516 1.16976 1.89262 1.47392 1.21281 0.94406 0.96835 0.98849 1.21337 1.00699 0.90676 0.96398 1.20963 0.92277 0.99005 1.02073 1.21046 0.93040 0.86522 1.05295 1.98345 1.78142 1.32632 1.96472 1.21014 1.00350 0.90812 1.02145 1.21519 0.94007 0.97625 0.96090 1.40966 1.09371 1.03496 1.54823 1.20091 0.93885 0.82682 1.49328 0.86814 1.25553 0.95741 1.00791 0.95370 1.69559 1.06506 1.29862 1.44111 0.85710 0.79353 0.79521 0.79065 1.19621 1.20247 1.18763 0.91015 0.92675 0.89356 0.88479 0.84409 0.85251 0.85164 0.84156 0.76020 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 7.95 36.00 0.29 -1.88 16 2 C 0.23 5.03 6.75 -81.54 -0.55 4.48 16 3 C -0.48 -10.13 9.11 -39.45 -0.36 -10.49 16 4 C 0.41 8.46 6.77 -34.47 -0.23 8.22 16 5 O -0.55 -12.31 13.16 5.06 0.07 -12.24 16 6 C -0.11 -1.97 5.88 -104.91 -0.62 -2.59 16 7 C -0.07 -1.14 9.59 -39.20 -0.38 -1.52 16 8 C -0.12 -1.69 9.81 -39.61 -0.39 -2.08 16 9 C -0.03 -0.44 6.33 -39.37 -0.25 -0.69 16 10 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 11 C -0.12 -1.69 9.81 -39.60 -0.39 -2.08 16 12 C -0.07 -1.14 9.43 -39.19 -0.37 -1.51 16 13 N -0.49 -11.24 5.31 -7.93 -0.04 -11.28 16 14 C -0.33 -7.70 9.46 -15.14 -0.14 -7.84 16 15 H 0.11 2.52 5.65 -52.48 -0.30 2.23 16 16 C 0.03 0.77 5.50 -17.44 -0.10 0.68 16 17 N -0.87 -20.99 13.04 55.51 0.72 -20.26 16 18 Si 0.94 17.87 29.55 -169.99 -5.02 12.84 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 22 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 23 H 0.05 1.07 5.92 -51.93 -0.31 0.76 16 24 H 0.09 1.82 6.17 -51.93 -0.32 1.50 16 25 H 0.10 1.91 6.25 -52.48 -0.33 1.58 16 26 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.14 2.04 6.22 -52.49 -0.33 1.72 16 30 H 0.40 9.34 7.84 -40.82 -0.32 9.02 16 31 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -25.13 285.88 -7.65 -32.78 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -2.70 Total: 13.64 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.48 Total: -17.28 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.68 Total: -31.54 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.24 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.84 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.13 -7.65 -32.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221964997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.725 kcal (2) G-P(sol) polarization free energy of solvation -25.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds