Wall clock time and date at job start Mon Mar 30 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35361 * 120.00497 * 2 1 4 4 C 1.41295 * 119.99819 * 352.56348 * 3 2 1 5 5 O 1.21842 * 120.00147 * 353.95110 * 4 3 2 6 6 C 1.47902 * 120.00147 * 173.95403 * 4 3 2 7 7 C 1.39615 * 120.13202 * 179.97438 * 6 4 3 8 8 C 1.37888 * 119.86851 * 179.97438 * 7 6 4 9 9 C 1.38520 * 120.13026 * 0.28344 * 8 7 6 10 10 Cl 1.73607 * 119.86596 * 179.70201 * 9 8 7 11 11 C 1.38524 * 120.26289 * 359.43818 * 9 8 7 12 12 C 1.37887 * 120.13049 * 0.56161 * 11 9 8 13 13 N 1.36500 * 119.99643 * 180.02562 * 2 1 3 14 14 C 1.36502 * 119.99986 * 359.97438 * 13 2 1 15 15 H 1.08003 * 120.00481 * 0.02562 * 14 13 2 16 16 C 1.39147 * 119.99935 * 180.02562 * 14 13 2 17 17 N 1.31305 * 119.99720 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46933 * 90.00039 * 18 16 14 20 20 H 1.48500 * 109.47130 * 209.99652 * 18 16 14 21 21 H 1.48499 * 109.47334 * 330.00181 * 18 16 14 22 22 H 1.08993 * 109.47131 * 84.52266 * 1 2 3 23 23 H 1.08996 * 109.47309 * 204.52759 * 1 2 3 24 24 H 1.09000 * 109.46727 * 324.52198 * 1 2 3 25 25 H 1.08005 * 120.00483 * 172.56054 * 3 2 1 26 26 H 1.08000 * 120.06560 * 359.96097 * 7 6 4 27 27 H 1.07999 * 119.93421 * 179.97438 * 8 7 6 28 28 H 1.08004 * 119.93525 * 180.25992 * 11 9 8 29 29 H 1.07999 * 120.06784 * 179.70165 * 12 11 9 30 30 H 0.97002 * 119.99939 * 180.02562 * 13 2 1 31 31 H 0.96997 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1839 1.1722 0.0000 4 6 1.4864 2.3907 -0.1584 5 8 0.2932 2.3822 -0.4048 6 6 2.2047 3.6767 -0.0251 7 6 1.5183 4.8824 -0.1816 8 6 2.1932 6.0782 -0.0556 9 6 3.5507 6.0848 0.2198 10 17 4.3953 7.5942 0.3693 11 6 4.2360 4.8918 0.3818 12 6 3.5718 3.6898 0.2581 13 7 2.1894 -1.1822 -0.0005 14 6 1.5068 -2.3643 -0.0005 15 1 0.4268 -2.3643 -0.0005 16 6 2.2025 -3.5694 -0.0005 17 7 3.5155 -3.5694 -0.0010 18 14 1.2684 -5.1870 0.0002 19 1 1.0203 -5.6159 -1.3997 20 1 2.0712 -6.2218 0.7001 21 1 -0.0289 -5.0092 0.7006 22 1 -0.3633 0.0981 -1.0229 23 1 -0.3634 -0.9349 0.4266 24 1 -0.3633 0.8369 0.5965 25 1 3.2571 1.1761 0.1211 26 1 0.4608 4.8784 -0.4010 27 1 1.6634 7.0114 -0.1769 28 1 5.2936 4.9032 0.6006 29 1 4.1081 2.7603 0.3799 30 1 3.1594 -1.1822 -0.0002 31 1 4.0004 -4.4094 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221964997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:15 Heat of formation + Delta-G solvation = -23.518120 kcal Electronic energy + Delta-G solvation = -16540.449365 eV Core-core repulsion = 13619.080318 eV Total energy + Delta-G solvation = -2921.369048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80352 -39.45218 -38.23127 -37.31364 -34.71292 -32.51622 -31.87424 -31.34703 -28.90197 -26.98232 -24.50085 -23.63118 -21.75537 -20.22162 -19.47715 -18.36766 -17.28612 -16.69575 -16.56308 -15.99235 -15.72225 -15.43784 -15.01722 -14.58486 -14.49244 -14.42714 -13.94281 -13.59105 -13.29675 -13.11593 -12.95235 -12.71663 -12.45407 -12.32884 -12.27272 -12.11576 -11.89667 -11.64058 -10.86186 -10.03405 -9.93122 -9.67205 -8.82613 -8.70884 -5.97664 -0.26850 0.34702 0.91254 1.09175 1.42663 1.50965 1.55165 2.18595 2.33552 2.94291 3.19601 3.21514 3.79794 3.84726 3.94281 4.29316 4.39832 4.40338 4.67776 4.77321 4.92584 4.98953 5.10537 5.12933 5.19899 5.34043 5.35767 5.41820 5.58442 5.76867 5.80127 6.11668 6.60128 7.25097 7.32681 7.48092 8.44414 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.003442 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.877682 B = 8132.552348 C = 8718.145250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.223 3.777 3 C -0.490 4.490 4 C 0.410 3.590 5 O -0.570 6.570 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.119 4.119 9 C -0.029 4.029 10 Cl -0.063 7.063 11 C -0.121 4.121 12 C -0.075 4.075 13 N -0.507 5.507 14 C -0.351 4.351 15 H 0.120 0.880 16 C -0.009 4.009 17 N -0.903 5.903 18 Si 1.003 2.997 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.255 1.255 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.398 0.602 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 11.966 1.107 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.089 3.911 3 C -0.520 4.520 4 C 0.306 3.694 5 O -0.462 6.462 6 C -0.144 4.144 7 C -0.095 4.095 8 C -0.137 4.137 9 C -0.056 4.056 10 Cl -0.034 7.034 11 C -0.139 4.139 12 C -0.094 4.094 13 N -0.103 5.103 14 C -0.481 4.481 15 H 0.138 0.862 16 C -0.212 4.212 17 N -0.538 5.538 18 Si 0.825 3.175 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.179 1.179 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.153 0.847 27 H 0.174 0.826 28 H 0.173 0.827 29 H 0.161 0.839 30 H 0.233 0.767 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.693 11.653 1.013 11.718 hybrid contribution 0.653 -0.689 0.004 0.950 sum 1.346 10.964 1.018 11.093 Atomic orbital electron populations 1.20957 0.89687 1.02084 1.02792 1.20508 0.94543 0.85666 0.90371 1.20319 0.99416 0.92064 1.40220 1.18341 0.87218 0.88185 0.75610 1.90492 1.17943 1.89972 1.47829 1.21035 0.95423 0.95818 1.02142 1.21375 1.00750 0.90912 0.96506 1.21183 0.92481 0.99164 1.00871 1.21224 0.93200 0.87447 1.03694 1.98361 1.77645 1.31158 1.96239 1.21249 1.01514 0.90067 1.01073 1.21564 0.93202 0.98718 0.95871 1.40963 1.09029 1.03703 1.56624 1.20398 0.94372 0.83181 1.50134 0.86205 1.26407 0.96436 1.03593 0.94801 1.69643 1.07797 1.30604 1.45739 0.84758 0.78316 0.75505 0.78963 1.19432 1.20181 1.17900 0.91142 0.91845 0.89723 0.87550 0.84655 0.82630 0.82657 0.83908 0.76684 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.04 7.95 71.24 0.57 -3.47 16 2 C 0.22 9.90 6.75 41.17 0.28 10.17 16 3 C -0.49 -20.70 9.11 22.36 0.20 -20.49 16 4 C 0.41 16.94 6.77 25.58 0.17 17.11 16 5 O -0.57 -25.66 13.16 -4.80 -0.06 -25.72 16 6 C -0.14 -4.91 5.88 -20.05 -0.12 -5.03 16 7 C -0.08 -2.32 9.59 22.52 0.22 -2.10 16 8 C -0.12 -2.90 9.81 22.25 0.22 -2.68 16 9 C -0.03 -0.69 6.33 22.41 0.14 -0.55 16 10 Cl -0.06 -1.27 28.95 -2.72 -0.08 -1.35 16 11 C -0.12 -2.94 9.81 22.25 0.22 -2.73 16 12 C -0.08 -2.21 9.43 22.52 0.21 -1.99 16 13 N -0.51 -23.70 5.31 -179.00 -0.95 -24.65 16 14 C -0.35 -16.61 9.46 84.18 0.80 -15.81 16 15 H 0.12 5.34 5.65 -2.91 -0.02 5.32 16 16 C -0.01 -0.40 5.50 84.99 0.47 0.07 16 17 N -0.90 -44.49 13.04 21.70 0.28 -44.21 16 18 Si 1.00 36.47 29.55 68.60 2.03 38.50 16 19 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.28 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 22 H 0.07 2.89 8.02 -2.39 -0.02 2.87 16 23 H 0.06 2.46 5.92 -2.39 -0.01 2.44 16 24 H 0.08 3.52 6.17 -2.39 -0.01 3.51 16 25 H 0.11 4.22 6.25 -2.91 -0.02 4.20 16 26 H 0.14 4.07 7.65 -2.91 -0.02 4.05 16 27 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.14 4.03 6.22 -2.91 -0.02 4.02 16 30 H 0.40 19.03 7.84 -92.71 -0.73 18.30 16 31 H 0.29 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -53.27 285.88 5.05 -48.22 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.45 Total: 36.70 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 3.37 Total: -27.50 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.67 Total: -68.86 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -53.27 5.05 -48.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221964997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.706 kcal (2) G-P(sol) polarization free energy of solvation -53.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds