Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39794 * 120.10035 * 260.27831 * 3 2 1 5 5 C 1.37693 * 119.91162 * 179.76835 * 4 3 2 6 6 C 1.39022 * 120.12946 * 0.50928 * 5 4 3 7 7 O 1.35756 * 119.89146 * 179.71809 * 6 5 4 8 8 C 1.42901 * 117.00268 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.46771 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46841 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00027 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00033 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99744 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47296 * 59.99625 * 15 13 11 17 17 H 1.48496 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46956 * 300.00023 * 15 13 11 19 19 C 1.38884 * 120.20872 * 359.74576 * 6 5 4 20 20 C 1.37913 * 120.08235 * 359.97438 * 19 6 5 21 21 Cl 1.73599 * 120.06102 * 179.97438 * 20 19 6 22 22 H 1.07996 * 120.04885 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.93201 * 180.24843 * 5 4 3 24 24 H 1.08997 * 109.46669 * 299.99383 * 8 7 6 25 25 H 1.09001 * 109.46942 * 59.99600 * 8 7 6 26 26 H 1.09002 * 109.47130 * 299.99731 * 9 8 7 27 27 H 1.09001 * 109.47574 * 60.00159 * 9 8 7 28 28 H 1.09002 * 109.46958 * 299.99738 * 10 9 8 29 29 H 1.09001 * 109.46987 * 59.99701 * 10 9 8 30 30 H 0.96996 * 119.99785 * 180.02562 * 14 13 11 31 31 H 1.08001 * 119.95700 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2052 1.1921 5 6 4.6459 0.2003 1.1884 6 6 5.3399 0.0029 0.0001 7 8 6.6974 0.0047 0.0011 8 6 7.3450 0.2145 1.2575 9 6 8.8620 0.1829 1.0609 10 6 9.5554 0.4069 2.4063 11 6 11.0496 0.3764 2.2125 12 1 11.4632 0.2132 1.2283 13 6 11.8885 0.5569 3.2918 14 7 11.3847 0.7562 4.4902 15 14 13.7406 0.5185 3.0517 16 1 14.1393 1.5901 2.1042 17 1 14.4136 0.7360 4.3574 18 1 14.1412 -0.8019 2.5027 19 6 4.6487 -0.1955 -1.1881 20 6 3.2696 -0.1980 -1.1935 21 17 2.4062 -0.4454 -2.6791 22 1 2.7314 0.3627 2.1154 23 1 5.1878 0.3543 2.1099 24 1 7.0506 1.1834 1.6606 25 1 7.0526 -0.5724 1.9528 26 1 9.1560 -0.7863 0.6579 27 1 9.1547 0.9696 0.3655 28 1 9.2614 1.3759 2.8097 29 1 9.2626 -0.3801 3.1014 30 1 11.9748 0.8835 5.2493 31 1 5.1919 -0.3489 -2.1089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226060779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -9.437714 kcal Electronic energy + Delta-G solvation = -16060.258941 eV Core-core repulsion = 13139.500466 eV Total energy + Delta-G solvation = -2920.758476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49711 -38.36455 -36.83422 -36.30766 -34.17356 -32.05745 -31.30027 -30.50888 -27.20271 -24.16954 -23.71473 -22.43430 -20.41952 -19.32199 -18.26054 -16.71318 -16.19073 -16.12971 -15.38752 -14.59450 -14.53835 -14.45386 -14.24744 -13.78360 -13.51011 -12.94658 -12.82902 -12.54385 -12.36982 -12.01875 -11.76955 -11.58839 -11.34812 -11.07591 -10.75830 -10.69263 -10.65661 -9.90792 -9.63983 -9.31005 -9.27292 -8.53342 -8.45976 -6.11551 -4.14629 0.41669 0.78228 1.56704 2.43833 2.65550 3.12270 3.27769 3.32562 3.35286 3.46032 3.63625 4.33258 4.37934 4.64537 4.76832 4.95515 5.24735 5.32265 5.32510 5.36406 5.48546 5.73218 5.82162 5.90983 6.03521 6.39496 6.50641 6.84598 7.22760 7.26658 7.49225 7.59486 7.86217 8.27082 8.91266 9.50372 10.99808 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.049027 B = 0.002949 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.971344 B = 9493.799508 C =10039.021609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.260 3.740 3 C -0.076 4.076 4 C -0.013 4.013 5 C -0.210 4.210 6 C 0.188 3.812 7 O -0.303 6.303 8 C 0.053 3.947 9 C -0.109 4.109 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.154 4.154 20 C 0.046 3.954 21 Cl -0.049 7.049 22 H 0.145 0.855 23 H 0.150 0.850 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.263 0.737 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.938 -1.470 -8.792 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.055 4.055 3 C -0.081 4.081 4 C -0.034 4.034 5 C -0.228 4.228 6 C 0.139 3.861 7 O -0.215 6.215 8 C -0.021 4.021 9 C -0.147 4.147 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.173 4.173 20 C 0.017 3.983 21 Cl -0.020 7.020 22 H 0.163 0.837 23 H 0.168 0.832 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.558 -1.487 -8.889 18.852 hybrid contribution 1.385 0.014 0.085 1.388 sum -15.173 -1.472 -8.805 17.604 Atomic orbital electron populations 1.81222 1.11790 1.09181 1.06912 1.25345 0.92295 0.93753 0.94076 1.15656 0.84783 1.13989 0.93646 1.20939 0.93413 0.92832 0.96172 1.21458 0.94624 1.07983 0.98779 1.19162 0.84109 0.89974 0.92879 1.86159 1.14496 1.84450 1.36368 1.23434 0.95397 1.00980 0.82247 1.21763 0.88312 1.02267 1.02366 1.19046 0.94994 0.97384 0.89759 1.21127 0.91067 1.49704 0.94319 0.92460 1.25015 0.99074 0.95074 0.95189 1.69939 1.35329 1.48962 0.99171 0.86606 0.85095 0.78697 0.77335 1.20140 1.21237 1.20144 1.20155 0.90912 1.07676 0.98547 1.20516 0.91690 0.99520 0.86612 1.98410 1.76323 1.94666 1.32563 0.83740 0.83223 0.91588 0.91590 0.91967 0.91962 0.96241 0.96242 0.92779 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.46 18.54 41.83 0.78 -4.69 16 2 C 0.26 2.93 14.38 -22.47 -0.32 2.61 16 3 C -0.08 -0.75 5.74 -106.78 -0.61 -1.36 16 4 C -0.01 -0.11 9.75 -39.20 -0.38 -0.49 16 5 C -0.21 -2.00 9.01 -39.49 -0.36 -2.36 16 6 C 0.19 2.11 6.69 -39.05 -0.26 1.85 16 7 O -0.30 -4.10 10.13 -18.98 -0.19 -4.30 16 8 C 0.05 0.76 4.74 37.16 0.18 0.94 16 9 C -0.11 -2.01 5.52 -26.73 -0.15 -2.16 16 10 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 15 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.15 -1.55 9.75 -39.46 -0.38 -1.94 16 20 C 0.05 0.46 6.34 -39.09 -0.25 0.21 16 21 Cl -0.05 -0.48 28.02 -51.86 -1.45 -1.93 16 22 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 23 H 0.15 1.30 6.27 -52.49 -0.33 0.97 16 24 H 0.07 0.87 7.65 -51.93 -0.40 0.48 16 25 H 0.07 0.87 7.65 -51.93 -0.40 0.48 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -28.93 298.61 -6.95 -35.88 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -3.20 Total: -5.26 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.09 Total: -15.06 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 1.51 Total: -29.58 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.45 Total: -1.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.93 -6.95 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226060779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.438 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds