Wall clock time and date at job start Mon Mar 30 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39794 * 120.10035 * 260.27831 * 3 2 1 5 5 C 1.37693 * 119.91162 * 179.76835 * 4 3 2 6 6 C 1.39022 * 120.12946 * 0.50928 * 5 4 3 7 7 O 1.35756 * 119.89146 * 179.71809 * 6 5 4 8 8 C 1.42901 * 117.00268 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.46771 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46841 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46911 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00027 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00033 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99744 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47296 * 59.99625 * 15 13 11 17 17 H 1.48496 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46956 * 300.00023 * 15 13 11 19 19 C 1.38884 * 120.20872 * 359.74576 * 6 5 4 20 20 C 1.37913 * 120.08235 * 359.97438 * 19 6 5 21 21 Cl 1.73599 * 120.06102 * 179.97438 * 20 19 6 22 22 H 1.07996 * 120.04885 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.93201 * 180.24843 * 5 4 3 24 24 H 1.08997 * 109.46669 * 299.99383 * 8 7 6 25 25 H 1.09001 * 109.46942 * 59.99600 * 8 7 6 26 26 H 1.09002 * 109.47130 * 299.99731 * 9 8 7 27 27 H 1.09001 * 109.47574 * 60.00159 * 9 8 7 28 28 H 1.09002 * 109.46958 * 299.99738 * 10 9 8 29 29 H 1.09001 * 109.46987 * 59.99701 * 10 9 8 30 30 H 0.96996 * 119.99785 * 180.02562 * 14 13 11 31 31 H 1.08001 * 119.95700 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2052 1.1921 5 6 4.6459 0.2003 1.1884 6 6 5.3399 0.0029 0.0001 7 8 6.6974 0.0047 0.0011 8 6 7.3450 0.2145 1.2575 9 6 8.8620 0.1829 1.0609 10 6 9.5554 0.4069 2.4063 11 6 11.0496 0.3764 2.2125 12 1 11.4632 0.2132 1.2283 13 6 11.8885 0.5569 3.2918 14 7 11.3847 0.7562 4.4902 15 14 13.7406 0.5185 3.0517 16 1 14.1393 1.5901 2.1042 17 1 14.4136 0.7360 4.3574 18 1 14.1412 -0.8019 2.5027 19 6 4.6487 -0.1955 -1.1881 20 6 3.2696 -0.1980 -1.1935 21 17 2.4062 -0.4454 -2.6791 22 1 2.7314 0.3627 2.1154 23 1 5.1878 0.3543 2.1099 24 1 7.0506 1.1834 1.6606 25 1 7.0526 -0.5724 1.9528 26 1 9.1560 -0.7863 0.6579 27 1 9.1547 0.9696 0.3655 28 1 9.2614 1.3759 2.8097 29 1 9.2626 -0.3801 3.1014 30 1 11.9748 0.8835 5.2493 31 1 5.1919 -0.3489 -2.1089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226060779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:21 Heat of formation + Delta-G solvation = -24.099764 kcal Electronic energy + Delta-G solvation = -16060.894735 eV Core-core repulsion = 13139.500466 eV Total energy + Delta-G solvation = -2921.394270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37109 -39.29041 -37.65411 -37.24404 -35.91440 -33.71947 -32.18235 -31.43715 -28.82169 -25.61611 -24.53530 -23.64139 -21.91741 -20.14457 -19.27003 -18.40038 -17.36025 -17.21864 -16.50086 -16.14758 -15.48258 -15.42205 -15.12717 -14.82969 -14.65593 -14.28312 -13.84235 -13.80464 -13.67718 -13.32849 -13.00022 -12.70083 -12.62752 -12.46613 -12.24354 -11.99914 -11.88629 -11.49492 -11.40408 -11.21197 -10.52101 -10.06628 -9.40031 -8.18872 -6.28540 -0.40877 0.04180 0.77756 1.44291 1.45726 1.53640 1.54920 1.80307 2.12693 2.44874 2.64747 2.77936 3.15722 3.61294 3.84039 3.98779 4.12702 4.13518 4.25581 4.51045 4.60344 4.73569 4.90329 4.92101 5.04661 5.10026 5.20998 5.32888 5.54118 5.73535 5.86377 6.21141 6.31273 6.37987 6.87572 7.40673 8.92504 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.049027 B = 0.002949 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.971344 B = 9493.799508 C =10039.021609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.279 3.721 3 C -0.078 4.078 4 C 0.000 4.000 5 C -0.206 4.206 6 C 0.172 3.828 7 O -0.316 6.316 8 C 0.064 3.936 9 C -0.099 4.099 10 C 0.028 3.972 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.960 3.040 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.151 4.151 20 C 0.044 3.956 21 Cl -0.049 7.049 22 H 0.173 0.827 23 H 0.161 0.839 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.264 0.736 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -1.526 -9.136 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.036 4.036 3 C -0.083 4.083 4 C -0.020 4.020 5 C -0.225 4.225 6 C 0.124 3.876 7 O -0.228 6.228 8 C -0.010 4.010 9 C -0.137 4.137 10 C -0.009 4.009 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.193 1.193 19 C -0.170 4.170 20 C 0.015 3.985 21 Cl -0.020 7.020 22 H 0.190 0.810 23 H 0.179 0.821 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.621 -1.545 -9.254 19.087 hybrid contribution 1.342 0.026 0.159 1.351 sum -15.280 -1.519 -9.096 17.847 Atomic orbital electron populations 1.81245 1.12822 1.10489 1.08045 1.25468 0.92371 0.92726 0.93033 1.15757 0.84054 1.14279 0.94196 1.21188 0.93001 0.91152 0.96659 1.21604 0.95020 1.07298 0.98586 1.19314 0.83130 0.91255 0.93921 1.86079 1.15925 1.85259 1.35574 1.23099 0.92825 1.02187 0.82874 1.21448 0.91168 1.01950 0.99152 1.18916 0.94158 0.95758 0.92102 1.21637 0.93057 1.49142 0.94459 0.92229 1.25884 1.03853 0.94793 0.94955 1.70054 1.36929 1.50099 0.99945 0.85575 0.79489 0.79080 0.77383 1.19310 1.20986 1.19323 1.20200 0.90911 1.07258 0.98678 1.20529 0.91657 0.99647 0.86693 1.98414 1.76269 1.94668 1.32669 0.81003 0.82122 0.90419 0.90426 0.92195 0.92189 0.97908 0.97904 0.92728 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.35 18.54 19.00 0.35 -11.00 16 2 C 0.28 5.83 14.38 88.33 1.27 7.10 16 3 C -0.08 -1.37 5.74 -21.26 -0.12 -1.49 16 4 C 0.00 0.00 9.75 22.52 0.22 0.22 16 5 C -0.21 -3.42 9.01 22.33 0.20 -3.21 16 6 C 0.17 3.52 6.69 22.61 0.15 3.68 16 7 O -0.32 -8.04 10.13 -90.82 -0.92 -8.96 16 8 C 0.06 1.74 4.74 71.98 0.34 2.08 16 9 C -0.10 -3.59 5.52 30.60 0.17 -3.43 16 10 C 0.03 1.32 4.97 29.85 0.15 1.47 16 11 C -0.54 -29.19 9.11 25.60 0.23 -28.96 16 12 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 15 Si 0.96 42.37 29.54 68.60 2.03 44.39 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 C -0.15 -2.80 9.75 22.35 0.22 -2.58 16 20 C 0.04 0.81 6.34 22.59 0.14 0.95 16 21 Cl -0.05 -0.91 28.02 -2.72 -0.08 -0.99 16 22 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 23 H 0.16 2.33 6.27 -2.91 -0.02 2.31 16 24 H 0.08 1.92 7.65 -2.39 -0.02 1.90 16 25 H 0.08 1.92 7.65 -2.39 -0.02 1.90 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -61.41 298.61 6.25 -55.15 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.15 Total: -1.64 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 3.43 Total: -23.53 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.64 Total: -64.42 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.92 Total: -8.96 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -61.41 6.25 -55.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226060779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.055 kcal (2) G-P(sol) polarization free energy of solvation -61.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds