Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39678 * 120.11920 * 239.26635 * 3 2 1 5 5 C 1.37959 * 119.96407 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.22181 * 0.02562 * 5 4 3 7 7 C 1.38867 * 120.24739 * 359.97438 * 6 5 4 8 8 O 1.35867 * 119.98816 * 180.02562 * 7 6 5 9 9 C 1.35630 * 118.00045 * 4.71991 * 8 7 6 10 10 C 1.39348 * 119.82778 * 268.01978 * 9 8 7 11 11 C 1.36410 * 120.18750 * 180.28458 * 10 9 8 12 12 C 1.40854 * 119.81188 * 359.97438 * 11 10 9 13 13 C 1.41187 * 120.17582 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00076 * 28.08306 * 13 12 11 15 15 C 1.39880 * 120.00043 * 208.08279 * 13 12 11 16 16 N 1.30886 * 120.00123 * 13.05980 * 15 13 12 17 17 Si 1.86800 * 120.00035 * 193.05591 * 15 13 12 18 18 H 1.48496 * 109.46982 * 59.99980 * 17 15 13 19 19 H 1.48504 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47101 * 299.99851 * 17 15 13 21 21 C 1.40847 * 119.64746 * 0.02562 * 12 11 10 22 22 C 1.36420 * 119.81532 * 0.02562 * 21 12 11 23 23 C 1.38540 * 120.02307 * 0.27138 * 7 6 5 24 24 H 1.07999 * 120.01270 * 0.04690 * 4 3 2 25 25 H 1.08007 * 119.89173 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.87851 * 179.97438 * 6 5 4 27 27 H 1.08005 * 119.90511 * 0.25608 * 10 9 8 28 28 H 1.07995 * 120.09719 * 180.02562 * 11 10 9 29 29 H 0.96998 * 120.00076 * 179.97438 * 16 15 13 30 30 H 1.07997 * 120.09423 * 179.97438 * 21 12 11 31 31 H 1.08004 * 119.90522 * 179.97438 * 22 21 12 32 32 H 1.08004 * 120.10340 * 179.70190 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.6184 1.0385 5 6 4.6482 0.6176 1.0350 6 6 5.3413 0.0072 0.0059 7 6 4.6538 -0.6096 -1.0311 8 8 5.3401 -1.2082 -2.0394 9 6 6.6918 -1.2648 -1.9438 10 6 7.4693 -0.2528 -2.5036 11 6 8.8296 -0.3053 -2.4168 12 6 9.4481 -1.3861 -1.7585 13 6 10.8554 -1.4485 -1.6646 14 1 11.4374 -0.5387 -1.6632 15 6 11.4960 -2.6886 -1.5735 16 7 10.8334 -3.7879 -1.8294 17 14 13.2973 -2.7758 -1.0865 18 1 13.4748 -2.1803 0.2622 19 1 13.7358 -4.1945 -1.0634 20 1 14.1135 -2.0220 -2.0718 21 6 8.6551 -2.4049 -1.1954 22 6 7.2960 -2.3380 -1.2918 23 6 3.2685 -0.6104 -1.0405 24 1 2.7306 1.0961 1.8439 25 1 5.1888 1.0952 1.8389 26 1 6.4213 0.0102 0.0085 27 1 6.9934 0.5752 -3.0080 28 1 9.4306 0.4800 -2.8508 29 1 11.2777 -4.6479 -1.7666 30 1 9.1217 -3.2371 -0.6895 31 1 6.6865 -3.1187 -0.8609 32 1 2.7325 -1.0856 -1.8488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227633602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = 38.735810 kcal Electronic energy + Delta-G solvation = -17914.337741 eV Core-core repulsion = 14998.101076 eV Total energy + Delta-G solvation = -2916.236665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18748 -38.31876 -36.87299 -36.07693 -33.66254 -31.24533 -30.37386 -29.78891 -29.09764 -25.40461 -23.73307 -22.50938 -21.35545 -21.06794 -18.98158 -17.56622 -16.64690 -16.27776 -15.82254 -15.56722 -14.82423 -14.37081 -14.09010 -13.93853 -13.66022 -13.13229 -12.99432 -12.76462 -12.61648 -12.32634 -11.96416 -11.70244 -11.61268 -11.39345 -11.29754 -11.17754 -10.83394 -10.50769 -10.03676 -9.59753 -9.37904 -8.94130 -8.00795 -7.83951 -7.51391 -6.98924 -4.61967 0.83050 1.50372 2.30256 2.61453 2.82475 2.94674 2.95483 2.98243 3.00373 3.70868 3.75482 3.95790 4.16235 4.48944 4.91402 5.11214 5.32251 5.39723 5.49689 5.58973 5.94321 6.01590 6.08250 6.24582 6.44271 6.53529 6.60317 6.74576 6.82166 6.92033 7.04190 7.30533 7.33462 7.42484 7.71733 7.76820 7.95874 8.23609 8.42653 8.61013 8.74316 9.94591 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.045832 B = 0.003731 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.778253 B = 7502.511619 C = 7596.859689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.266 3.734 3 C -0.004 4.004 4 C -0.120 4.120 5 C -0.085 4.085 6 C -0.160 4.160 7 C 0.133 3.867 8 O -0.242 6.242 9 C -0.084 4.084 10 C -0.081 4.081 11 C -0.218 4.218 12 C 0.117 3.883 13 C -0.450 4.450 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.786 5.786 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.116 4.116 24 H 0.127 0.873 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.286 0.714 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 4.435 4.410 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.049 4.049 3 C -0.008 4.008 4 C -0.141 4.141 5 C -0.103 4.103 6 C -0.179 4.179 7 C 0.088 3.912 8 O -0.153 6.153 9 C -0.126 4.126 10 C -0.100 4.100 11 C -0.238 4.238 12 C 0.114 3.886 13 C -0.478 4.478 14 H 0.100 0.900 15 C -0.147 4.147 16 N -0.410 5.410 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.176 4.176 22 C -0.112 4.112 23 C -0.137 4.137 24 H 0.145 0.855 25 H 0.150 0.850 26 H 0.161 0.839 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.217 4.071 4.205 8.538 hybrid contribution 1.393 -0.157 0.190 1.415 sum -4.824 3.914 4.395 7.610 Atomic orbital electron populations 1.81220 1.12092 1.08993 1.08202 1.25705 0.92611 0.93277 0.93282 1.15603 0.83866 1.03703 0.97587 1.20941 0.94305 1.00987 0.97889 1.20893 0.93259 0.98136 0.98056 1.21776 1.01989 0.99524 0.94651 1.19527 0.91149 0.91702 0.88798 1.84539 1.19144 1.71859 1.39782 1.18107 0.78422 1.00335 1.15770 1.20459 0.94206 0.96191 0.99117 1.20647 0.93052 1.02611 1.07457 1.17753 0.93541 0.90317 0.86970 1.19645 0.91929 0.93395 1.42857 0.89961 1.26001 1.01260 0.95151 0.92251 1.69801 1.38794 0.99403 1.33006 0.86246 0.81241 0.78268 0.80377 1.18612 1.20130 1.18799 1.21010 0.91226 1.01809 1.03519 1.20642 0.95550 0.96448 0.98571 1.20285 0.91450 1.02800 0.99201 0.85456 0.85044 0.83929 0.88504 0.88103 0.90337 0.85783 0.88537 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.37 18.54 41.84 0.78 -5.59 16 2 C 0.27 3.50 15.33 -22.47 -0.34 3.16 16 3 C 0.00 -0.05 5.73 -106.96 -0.61 -0.66 16 4 C -0.12 -1.34 9.75 -39.15 -0.38 -1.72 16 5 C -0.09 -1.01 10.02 -39.67 -0.40 -1.41 16 6 C -0.16 -2.39 9.19 -39.34 -0.36 -2.75 16 7 C 0.13 2.15 6.66 -39.24 -0.26 1.88 16 8 O -0.24 -4.64 9.95 -2.68 -0.03 -4.67 16 9 C -0.08 -1.75 3.99 -38.75 -0.15 -1.90 16 10 C -0.08 -1.68 9.73 -39.83 -0.39 -2.06 16 11 C -0.22 -4.82 9.74 -39.25 -0.38 -5.20 16 12 C 0.12 2.82 5.55 -106.80 -0.59 2.23 16 13 C -0.45 -10.79 9.04 -37.85 -0.34 -11.13 16 14 H 0.08 1.87 7.88 -52.49 -0.41 1.46 16 15 C 0.07 1.67 5.21 -17.34 -0.09 1.57 16 16 N -0.79 -18.71 10.91 55.54 0.61 -18.11 16 17 Si 0.91 17.06 29.58 -169.99 -5.03 12.03 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 21 C -0.16 -3.69 8.61 -39.25 -0.34 -4.02 16 22 C -0.09 -2.02 9.92 -39.82 -0.39 -2.42 16 23 C -0.12 -1.61 9.70 -38.99 -0.38 -1.99 16 24 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 25 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 26 H 0.14 2.35 6.66 -52.48 -0.35 2.00 16 27 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 30 H 0.12 3.02 6.24 -52.49 -0.33 2.70 16 31 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 32 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -25.12 295.90 -7.40 -32.52 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.76 Total: 5.78 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -5.42 Total: -26.42 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 1.38 Total: -23.70 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.03 Total: -4.67 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.12 -7.40 -32.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227633602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.254 kcal (2) G-P(sol) polarization free energy of solvation -25.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds