Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39678 * 120.11920 * 239.26635 * 3 2 1 5 5 C 1.37959 * 119.96407 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.22181 * 0.02562 * 5 4 3 7 7 C 1.38867 * 120.24739 * 359.97438 * 6 5 4 8 8 O 1.35867 * 119.98816 * 180.02562 * 7 6 5 9 9 C 1.35630 * 118.00045 * 4.71991 * 8 7 6 10 10 C 1.39348 * 119.82778 * 268.01978 * 9 8 7 11 11 C 1.36410 * 120.18750 * 180.28458 * 10 9 8 12 12 C 1.40854 * 119.81188 * 359.97438 * 11 10 9 13 13 C 1.41187 * 120.17582 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00076 * 28.08306 * 13 12 11 15 15 C 1.39880 * 120.00043 * 208.08279 * 13 12 11 16 16 N 1.30886 * 120.00123 * 13.05980 * 15 13 12 17 17 Si 1.86800 * 120.00035 * 193.05591 * 15 13 12 18 18 H 1.48496 * 109.46982 * 59.99980 * 17 15 13 19 19 H 1.48504 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47101 * 299.99851 * 17 15 13 21 21 C 1.40847 * 119.64746 * 0.02562 * 12 11 10 22 22 C 1.36420 * 119.81532 * 0.02562 * 21 12 11 23 23 C 1.38540 * 120.02307 * 0.27138 * 7 6 5 24 24 H 1.07999 * 120.01270 * 0.04690 * 4 3 2 25 25 H 1.08007 * 119.89173 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.87851 * 179.97438 * 6 5 4 27 27 H 1.08005 * 119.90511 * 0.25608 * 10 9 8 28 28 H 1.07995 * 120.09719 * 180.02562 * 11 10 9 29 29 H 0.96998 * 120.00076 * 179.97438 * 16 15 13 30 30 H 1.07997 * 120.09423 * 179.97438 * 21 12 11 31 31 H 1.08004 * 119.90522 * 179.97438 * 22 21 12 32 32 H 1.08004 * 120.10340 * 179.70190 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.6184 1.0385 5 6 4.6482 0.6176 1.0350 6 6 5.3413 0.0072 0.0059 7 6 4.6538 -0.6096 -1.0311 8 8 5.3401 -1.2082 -2.0394 9 6 6.6918 -1.2648 -1.9438 10 6 7.4693 -0.2528 -2.5036 11 6 8.8296 -0.3053 -2.4168 12 6 9.4481 -1.3861 -1.7585 13 6 10.8554 -1.4485 -1.6646 14 1 11.4374 -0.5387 -1.6632 15 6 11.4960 -2.6886 -1.5735 16 7 10.8334 -3.7879 -1.8294 17 14 13.2973 -2.7758 -1.0865 18 1 13.4748 -2.1803 0.2622 19 1 13.7358 -4.1945 -1.0634 20 1 14.1135 -2.0220 -2.0718 21 6 8.6551 -2.4049 -1.1954 22 6 7.2960 -2.3380 -1.2918 23 6 3.2685 -0.6104 -1.0405 24 1 2.7306 1.0961 1.8439 25 1 5.1888 1.0952 1.8389 26 1 6.4213 0.0102 0.0085 27 1 6.9934 0.5752 -3.0080 28 1 9.4306 0.4800 -2.8508 29 1 11.2777 -4.6479 -1.7666 30 1 9.1217 -3.2371 -0.6895 31 1 6.6865 -3.1187 -0.8609 32 1 2.7325 -1.0856 -1.8488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227633602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = 28.737558 kcal Electronic energy + Delta-G solvation = -17914.771298 eV Core-core repulsion = 14998.101076 eV Total energy + Delta-G solvation = -2916.670222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52725 -39.65986 -38.37178 -37.25329 -35.35057 -32.33727 -31.78287 -31.44793 -30.60198 -27.04021 -24.92653 -23.70624 -23.06065 -22.57076 -20.31053 -19.30633 -17.97494 -17.45179 -17.20427 -16.93461 -16.37464 -15.82536 -15.45352 -15.10145 -14.78437 -14.53326 -14.23281 -14.19932 -14.01226 -13.85921 -13.50713 -13.30872 -12.85869 -12.75886 -12.64979 -12.53032 -12.25677 -11.99073 -11.67468 -11.25869 -11.05071 -10.00287 -9.59311 -9.25727 -9.18158 -8.67878 -6.40544 -0.24254 0.44273 0.66114 1.06764 1.41932 1.48059 1.53506 1.55620 1.92291 2.20451 2.41126 2.71490 2.89518 3.03647 3.64089 3.90744 4.15859 4.21762 4.34276 4.38264 4.41111 4.53251 4.85993 4.98083 5.08120 5.14735 5.23048 5.30215 5.38691 5.47595 5.52112 5.60140 5.82615 5.99236 6.01228 6.21277 6.37628 6.52993 6.76752 6.85706 7.09049 8.28118 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.045832 B = 0.003731 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.778253 B = 7502.511619 C = 7596.859689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.286 3.714 3 C -0.002 4.002 4 C -0.097 4.097 5 C -0.077 4.077 6 C -0.169 4.169 7 C 0.104 3.896 8 O -0.261 6.261 9 C -0.064 4.064 10 C -0.084 4.084 11 C -0.224 4.224 12 C 0.089 3.911 13 C -0.484 4.484 14 H 0.085 0.915 15 C 0.034 3.966 16 N -0.822 5.822 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.259 1.259 21 C -0.172 4.172 22 C -0.100 4.100 23 C -0.112 4.112 24 H 0.163 0.837 25 H 0.163 0.837 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.291 0.709 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 5.659 5.612 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.028 4.028 3 C -0.005 4.005 4 C -0.117 4.117 5 C -0.095 4.095 6 C -0.188 4.188 7 C 0.060 3.940 8 O -0.173 6.173 9 C -0.106 4.106 10 C -0.102 4.102 11 C -0.243 4.243 12 C 0.086 3.914 13 C -0.513 4.513 14 H 0.103 0.897 15 C -0.182 4.182 16 N -0.447 5.447 17 Si 0.806 3.194 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.183 1.183 21 C -0.191 4.191 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.180 0.820 25 H 0.181 0.819 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.049 5.308 5.409 10.349 hybrid contribution 1.373 -0.451 -0.141 1.452 sum -5.675 4.857 5.268 9.140 Atomic orbital electron populations 1.81259 1.12909 1.09965 1.09109 1.25610 0.92374 0.92404 0.92426 1.15597 0.83441 1.03826 0.97686 1.21339 0.94015 0.98767 0.97611 1.21192 0.93655 0.97001 0.97605 1.21755 1.01184 1.00353 0.95554 1.19571 0.91725 0.93678 0.88998 1.84399 1.17984 1.73320 1.41559 1.18112 0.79508 0.99406 1.13617 1.20670 0.93769 0.96821 0.98971 1.20829 0.93854 1.02424 1.07232 1.18059 0.94172 0.91248 0.87908 1.19896 0.92293 0.94210 1.44900 0.89710 1.26812 1.05434 0.94382 0.91550 1.69861 1.40658 1.00019 1.34141 0.85191 0.75834 0.78408 0.80001 1.18165 1.19489 1.18348 1.20931 0.91998 1.01753 1.04454 1.20769 0.95059 0.97219 0.98799 1.20338 0.90546 1.02584 0.99825 0.81962 0.81948 0.85928 0.86299 0.87047 0.89840 0.87334 0.87572 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.53 18.54 19.00 0.35 -12.18 16 2 C 0.29 6.74 15.33 88.33 1.35 8.09 16 3 C 0.00 -0.04 5.73 -21.38 -0.12 -0.17 16 4 C -0.10 -1.74 9.75 22.55 0.22 -1.52 16 5 C -0.08 -1.54 10.02 22.21 0.22 -1.32 16 6 C -0.17 -4.78 9.19 22.43 0.21 -4.58 16 7 C 0.10 3.23 6.66 22.49 0.15 3.38 16 8 O -0.26 -9.89 9.95 -32.51 -0.32 -10.21 16 9 C -0.06 -2.67 3.99 22.81 0.09 -2.58 16 10 C -0.08 -3.45 9.73 22.11 0.22 -3.24 16 11 C -0.22 -10.03 9.74 22.48 0.22 -9.81 16 12 C 0.09 4.41 5.55 -21.28 -0.12 4.29 16 13 C -0.48 -23.94 9.04 23.39 0.21 -23.73 16 14 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 15 C 0.03 1.59 5.21 85.23 0.44 2.03 16 16 N -0.82 -40.38 10.91 21.82 0.24 -40.14 16 17 Si 0.99 35.25 29.58 68.60 2.03 37.27 16 18 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 19 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 21 C -0.17 -8.42 8.61 22.48 0.19 -8.23 16 22 C -0.10 -4.42 9.92 22.11 0.22 -4.20 16 23 C -0.11 -2.88 9.70 22.65 0.22 -2.66 16 24 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 25 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 26 H 0.12 4.00 6.66 -2.91 -0.02 3.98 16 27 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 30 H 0.11 5.57 6.24 -2.91 -0.02 5.56 16 31 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -55.37 295.90 7.17 -48.19 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.15 Total: 21.30 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 3.73 Total: -44.23 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.59 Total: -52.32 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.32 Total: -10.21 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.27 kcal Total: -55.37 7.17 -48.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227633602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.932 kcal (2) G-P(sol) polarization free energy of solvation -55.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds