Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 119.99082 * 2 1 4 4 C 1.38188 * 120.23215 * 180.23580 * 3 2 1 5 5 C 1.39085 * 120.21264 * 359.49251 * 4 3 2 6 6 S 1.76198 * 120.00756 * 180.27700 * 5 4 3 7 7 C 1.38704 * 119.97933 * 0.25180 * 5 4 3 8 8 C 1.39464 * 119.77286 * 359.97438 * 7 5 4 9 9 C 1.47868 * 120.11195 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99924 * 130.08380 * 9 8 7 11 11 N 1.34773 * 119.99617 * 310.09040 * 9 8 7 12 12 C 1.46498 * 120.00561 * 4.43095 * 11 9 8 13 13 C 1.46508 * 119.99654 * 184.42954 * 11 9 8 14 14 C 1.50699 * 109.47061 * 89.99894 * 13 11 9 15 15 H 1.07999 * 119.99800 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99744 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47445 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46517 * 120.00623 * 18 16 14 21 21 H 1.48495 * 109.47049 * 239.99868 * 18 16 14 22 22 H 1.09004 * 109.46790 * 264.80749 * 1 2 3 23 23 H 1.09001 * 109.46994 * 24.79817 * 1 2 3 24 24 H 1.08995 * 109.47245 * 144.80683 * 1 2 3 25 25 H 1.07989 * 119.88698 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.89407 * 179.76182 * 4 3 2 27 27 H 1.34496 * 103.00298 * 89.99998 * 6 5 4 28 28 H 1.08002 * 120.11769 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47349 * 93.07821 * 12 11 9 30 30 H 1.08999 * 109.47436 * 213.08337 * 12 11 9 31 31 H 1.09003 * 109.46468 * 333.07862 * 12 11 9 32 32 H 1.09001 * 109.47012 * 210.00021 * 13 11 9 33 33 H 1.08998 * 109.46867 * 329.99476 * 13 11 9 34 34 H 0.96993 * 119.99945 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1956 0.0000 4 6 3.5789 1.2014 -0.0049 5 6 4.2838 0.0025 0.0008 6 16 6.0458 0.0163 0.0018 7 6 3.5995 -1.2039 0.0061 8 6 2.2048 -1.2090 0.0063 9 6 1.4676 -2.4908 0.0125 10 8 0.5772 -2.6758 0.8189 11 7 1.7832 -3.4539 -0.8758 12 6 2.9188 -3.2702 -1.7829 13 6 0.9905 -4.6846 -0.9344 14 6 -0.1429 -4.5060 -1.9115 15 1 -0.2611 -3.5694 -2.4360 16 6 -1.0288 -5.5385 -2.1357 17 7 -0.8850 -6.6788 -1.4966 18 14 -2.4341 -5.3169 -3.3463 19 1 -2.3754 -3.9521 -3.9285 20 1 -2.3153 -6.3233 -4.4319 21 1 -3.7282 -5.4998 -2.6414 22 1 -0.3633 -0.0930 1.0235 23 1 -0.3633 0.9329 -0.4310 24 1 -0.3633 -0.8398 -0.5922 25 1 1.6551 2.1297 0.0004 26 1 4.1131 2.1399 -0.0088 27 1 6.3475 0.0244 1.3125 28 1 4.1446 -2.1362 0.0101 29 1 3.8129 -3.7079 -1.3390 30 1 2.7078 -3.7605 -2.7333 31 1 3.0807 -2.2056 -1.9514 32 1 1.6241 -5.5097 -1.2597 33 1 0.5870 -4.9042 0.0540 34 1 -1.5085 -7.4050 -1.6541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234294047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -7.185547 kcal Electronic energy + Delta-G solvation = -17761.527004 eV Core-core repulsion = 14978.742991 eV Total energy + Delta-G solvation = -2782.784013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09088 -37.95156 -34.97444 -32.81415 -32.66041 -31.25005 -27.87267 -27.08214 -25.89722 -23.91365 -22.50437 -21.54981 -19.34684 -17.70746 -16.56396 -16.48222 -16.04830 -15.74374 -15.24189 -14.73881 -14.18760 -14.06526 -13.69394 -13.41618 -12.91194 -12.52082 -12.39475 -12.17907 -12.05126 -11.84471 -11.52975 -11.32676 -11.21223 -10.89772 -10.75178 -10.61787 -10.19213 -9.65918 -9.16701 -8.89486 -8.71816 -8.46586 -8.32502 -7.70132 -6.07465 -4.12599 0.78355 1.10757 1.56533 2.61257 3.24228 3.28009 3.35677 3.39412 3.64634 3.98202 4.41748 4.68934 4.83095 4.87983 5.12694 5.25769 5.28216 5.51881 5.62311 5.70649 5.82118 5.89398 5.92693 6.08447 6.12566 6.24045 6.27928 6.51910 6.71922 7.02384 7.39708 7.47788 7.88618 8.18952 8.32217 8.83344 8.99438 9.52663 11.00710 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.005154 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.360472 B = 5431.658229 C = 5939.330297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.009 4.009 3 C -0.135 4.135 4 C -0.058 4.058 5 C -0.125 4.125 6 S -0.130 6.130 7 C -0.040 4.040 8 C -0.122 4.122 9 C 0.548 3.452 10 O -0.532 6.532 11 N -0.592 5.592 12 C 0.077 3.923 13 C 0.243 3.757 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 14.679 1.385 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.010 4.010 3 C -0.155 4.155 4 C -0.079 4.079 5 C -0.237 4.237 6 S 0.027 5.973 7 C -0.061 4.061 8 C -0.128 4.128 9 C 0.334 3.666 10 O -0.410 6.410 11 N -0.323 5.323 12 C -0.067 4.067 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.037 0.963 28 H 0.157 0.843 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.934 14.350 1.584 18.110 hybrid contribution -1.518 -0.014 0.294 1.546 sum 9.416 14.335 1.878 17.254 Atomic orbital electron populations 1.20938 0.89895 1.03079 1.03884 1.20197 0.96997 0.91517 0.92240 1.21023 0.93704 0.97643 1.03133 1.21609 0.94060 0.97131 0.95056 1.21008 0.94916 0.95562 1.12225 1.85954 1.01130 1.98642 1.11587 1.21821 0.92934 0.97742 0.93607 1.20203 0.93424 0.94693 1.04438 1.18069 0.83391 0.83080 0.82048 1.90760 1.31409 1.80082 1.38743 1.48120 1.30525 1.19658 1.34001 1.21850 0.88561 1.01345 0.94955 1.19364 0.89996 0.79336 0.98847 1.21448 1.11508 0.99605 1.24060 0.92356 1.24934 0.97762 0.95036 0.96307 1.69939 1.37519 1.03840 1.41947 0.86441 0.82104 0.78129 0.80755 1.19767 1.20913 1.20848 0.89798 0.91571 0.90066 0.84901 0.84832 0.96324 0.84260 0.93353 0.90669 0.91886 0.94713 0.93563 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.88 36.00 0.32 -1.48 16 2 C -0.01 -0.13 5.91 -104.19 -0.62 -0.74 16 3 C -0.14 -1.56 9.65 -39.67 -0.38 -1.95 16 4 C -0.06 -0.64 9.78 -39.29 -0.38 -1.02 16 5 C -0.13 -1.55 6.11 -39.10 -0.24 -1.79 16 6 S -0.13 -1.41 25.77 -107.50 -2.77 -4.18 16 7 C -0.04 -0.57 7.38 -38.95 -0.29 -0.85 16 8 C -0.12 -2.05 4.86 -104.99 -0.51 -2.56 16 9 C 0.55 11.63 6.30 -12.32 -0.08 11.56 16 10 O -0.53 -13.28 15.41 5.32 0.08 -13.19 16 11 N -0.59 -12.70 2.86 -184.07 -0.53 -13.22 16 12 C 0.08 1.27 9.11 59.85 0.55 1.81 16 13 C 0.24 6.34 5.21 -5.19 -0.03 6.31 16 14 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 24 H 0.08 1.46 7.08 -51.93 -0.37 1.09 16 25 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.07 0.73 9.07 97.61 0.89 1.61 16 28 H 0.14 1.88 6.65 -52.49 -0.35 1.53 16 29 H 0.05 0.68 7.59 -51.93 -0.39 0.29 16 30 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.06 0.93 5.71 -51.93 -0.30 0.64 16 32 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -31.65 304.29 -7.97 -39.62 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -2.98 Total: -0.44 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.08 Total: -4.15 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.21 Total: -38.81 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.77 Total: -4.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.65 -7.97 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234294047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.432 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds