Wall clock time and date at job start Mon Mar 30 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 119.99082 * 2 1 4 4 C 1.38188 * 120.23215 * 180.23580 * 3 2 1 5 5 C 1.39085 * 120.21264 * 359.49251 * 4 3 2 6 6 S 1.76198 * 120.00756 * 180.27700 * 5 4 3 7 7 C 1.38704 * 119.97933 * 0.25180 * 5 4 3 8 8 C 1.39464 * 119.77286 * 359.97438 * 7 5 4 9 9 C 1.47868 * 120.11195 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99924 * 130.08380 * 9 8 7 11 11 N 1.34773 * 119.99617 * 310.09040 * 9 8 7 12 12 C 1.46498 * 120.00561 * 4.43095 * 11 9 8 13 13 C 1.46508 * 119.99654 * 184.42954 * 11 9 8 14 14 C 1.50699 * 109.47061 * 89.99894 * 13 11 9 15 15 H 1.07999 * 119.99800 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99744 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47445 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46517 * 120.00623 * 18 16 14 21 21 H 1.48495 * 109.47049 * 239.99868 * 18 16 14 22 22 H 1.09004 * 109.46790 * 264.80749 * 1 2 3 23 23 H 1.09001 * 109.46994 * 24.79817 * 1 2 3 24 24 H 1.08995 * 109.47245 * 144.80683 * 1 2 3 25 25 H 1.07989 * 119.88698 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.89407 * 179.76182 * 4 3 2 27 27 H 1.34496 * 103.00298 * 89.99998 * 6 5 4 28 28 H 1.08002 * 120.11769 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47349 * 93.07821 * 12 11 9 30 30 H 1.08999 * 109.47436 * 213.08337 * 12 11 9 31 31 H 1.09003 * 109.46468 * 333.07862 * 12 11 9 32 32 H 1.09001 * 109.47012 * 210.00021 * 13 11 9 33 33 H 1.08998 * 109.46867 * 329.99476 * 13 11 9 34 34 H 0.96993 * 119.99945 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1956 0.0000 4 6 3.5789 1.2014 -0.0049 5 6 4.2838 0.0025 0.0008 6 16 6.0458 0.0163 0.0018 7 6 3.5995 -1.2039 0.0061 8 6 2.2048 -1.2090 0.0063 9 6 1.4676 -2.4908 0.0125 10 8 0.5772 -2.6758 0.8189 11 7 1.7832 -3.4539 -0.8758 12 6 2.9188 -3.2702 -1.7829 13 6 0.9905 -4.6846 -0.9344 14 6 -0.1429 -4.5060 -1.9115 15 1 -0.2611 -3.5694 -2.4360 16 6 -1.0288 -5.5385 -2.1357 17 7 -0.8850 -6.6788 -1.4966 18 14 -2.4341 -5.3169 -3.3463 19 1 -2.3754 -3.9521 -3.9285 20 1 -2.3153 -6.3233 -4.4319 21 1 -3.7282 -5.4998 -2.6414 22 1 -0.3633 -0.0930 1.0235 23 1 -0.3633 0.9329 -0.4310 24 1 -0.3633 -0.8398 -0.5922 25 1 1.6551 2.1297 0.0004 26 1 4.1131 2.1399 -0.0088 27 1 6.3475 0.0244 1.3125 28 1 4.1446 -2.1362 0.0101 29 1 3.8129 -3.7079 -1.3390 30 1 2.7078 -3.7605 -2.7333 31 1 3.0807 -2.2056 -1.9514 32 1 1.6241 -5.5097 -1.2597 33 1 0.5870 -4.9042 0.0540 34 1 -1.5085 -7.4050 -1.6541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234294047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:37 Heat of formation + Delta-G solvation = -26.664188 kcal Electronic energy + Delta-G solvation = -17762.371662 eV Core-core repulsion = 14978.742991 eV Total energy + Delta-G solvation = -2783.628671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44242 -39.33726 -36.74091 -34.81489 -33.81905 -32.49722 -29.72384 -28.28489 -27.43576 -25.60235 -23.91330 -22.73536 -20.72482 -18.90977 -18.70030 -17.82043 -17.36961 -16.86713 -16.82413 -16.28609 -15.77544 -15.42663 -14.80925 -14.52402 -14.50461 -14.14750 -13.90609 -13.52980 -13.41508 -13.24887 -13.09806 -12.84739 -12.65213 -12.56879 -12.37716 -12.23472 -11.72695 -11.66563 -10.78207 -10.66809 -9.99666 -9.77420 -9.49494 -9.15670 -8.24565 -6.39653 -0.23339 0.06245 0.65722 1.36405 1.38240 1.50321 1.63842 1.89209 2.25393 2.40547 2.63941 3.05380 3.49781 3.77122 3.81767 4.10490 4.27217 4.32962 4.47759 4.58907 4.63201 4.68817 4.79188 4.88621 4.97061 5.02959 5.12872 5.18853 5.19489 5.45442 5.51502 5.72262 5.78225 6.02154 6.61888 6.69818 7.21073 7.36361 8.83179 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.005154 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.360472 B = 5431.658229 C = 5939.330297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.024 4.024 3 C -0.121 4.121 4 C -0.042 4.042 5 C -0.129 4.129 6 S -0.116 6.116 7 C -0.042 4.042 8 C -0.148 4.148 9 C 0.544 3.456 10 O -0.585 6.585 11 N -0.600 5.600 12 C 0.076 3.924 13 C 0.258 3.742 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.269 1.269 21 H -0.280 1.280 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.037 0.963 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.002 0.998 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.881 17.637 0.267 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.025 4.025 3 C -0.140 4.140 4 C -0.062 4.062 5 C -0.240 4.240 6 S 0.041 5.959 7 C -0.063 4.063 8 C -0.153 4.153 9 C 0.332 3.668 10 O -0.467 6.467 11 N -0.330 5.330 12 C -0.066 4.066 13 C 0.137 3.863 14 C -0.581 4.581 15 H 0.071 0.929 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.206 1.206 22 H 0.091 0.909 23 H 0.121 0.879 24 H 0.056 0.944 25 H 0.188 0.812 26 H 0.188 0.812 27 H 0.045 0.955 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.306 17.324 0.445 21.255 hybrid contribution -1.815 -0.883 0.701 2.137 sum 10.491 16.441 1.146 19.537 Atomic orbital electron populations 1.20867 0.90622 1.03089 1.02761 1.20337 0.96807 0.92159 0.93246 1.21359 0.94122 0.97478 1.01058 1.22080 0.93898 0.97994 0.92234 1.21203 0.96162 0.95299 1.11369 1.85957 0.99229 1.98565 1.12178 1.21804 0.91747 0.98924 0.93861 1.19843 0.94345 0.92701 1.08375 1.18833 0.82867 0.84317 0.80737 1.90706 1.33984 1.81269 1.40728 1.48114 1.31329 1.18463 1.35141 1.22065 0.87576 1.03012 0.93935 1.18844 0.90150 0.81411 0.95918 1.21673 1.12525 0.99507 1.24423 0.92891 1.25858 1.00401 0.94588 0.98134 1.70055 1.38680 1.04681 1.43307 0.85346 0.78285 0.78595 0.78469 1.19048 1.19374 1.20606 0.90855 0.87863 0.94372 0.81185 0.81162 0.95468 0.84172 0.90767 0.91113 0.89728 0.95472 0.98017 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.88 71.24 0.63 -2.85 16 2 C -0.02 -0.70 5.91 -19.58 -0.12 -0.81 16 3 C -0.12 -2.31 9.65 22.21 0.21 -2.10 16 4 C -0.04 -0.72 9.78 22.46 0.22 -0.50 16 5 C -0.13 -2.75 6.11 22.58 0.14 -2.62 16 6 S -0.12 -2.11 25.77 -56.49 -1.46 -3.57 16 7 C -0.04 -1.14 7.38 22.68 0.17 -0.97 16 8 C -0.15 -4.94 4.86 -20.11 -0.10 -5.04 16 9 C 0.54 24.29 6.30 86.79 0.55 24.84 16 10 O -0.59 -31.43 15.41 -3.87 -0.06 -31.49 16 11 N -0.60 -26.95 2.86 -854.55 -2.44 -29.39 16 12 C 0.08 2.52 9.11 127.77 1.16 3.68 16 13 C 0.26 14.25 5.21 85.63 0.45 14.70 16 14 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 15 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 18 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 23 H 0.10 2.18 8.05 -2.39 -0.02 2.16 16 24 H 0.04 1.44 7.08 -2.39 -0.02 1.42 16 25 H 0.17 2.01 8.06 -2.92 -0.02 1.99 16 26 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 27 H 0.08 1.35 9.07 73.35 0.67 2.02 16 28 H 0.14 3.63 6.65 -2.91 -0.02 3.61 16 29 H 0.07 2.05 7.59 -2.39 -0.02 2.03 16 30 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 31 H 0.08 2.43 5.71 -2.39 -0.01 2.42 16 32 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 33 H 0.00 0.11 7.36 -2.39 -0.02 0.09 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -73.15 304.29 4.16 -68.99 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.78 Total: 6.61 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.02 Total: -2.07 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.16 Total: -85.44 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -1.46 Total: -3.57 kcal Total: -73.15 4.16 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234294047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.329 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds