Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.50700 * 109.46917 * 119.99900 * 2 1 3 5 5 H 1.07992 * 120.00286 * 120.00024 * 4 2 1 6 6 C 1.37880 * 120.00093 * 300.00301 * 4 2 1 7 7 N 1.31509 * 120.00366 * 180.02562 * 6 4 2 8 8 Si 1.86809 * 119.99760 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46891 * 90.00485 * 8 6 4 10 10 H 1.48495 * 109.46879 * 210.00019 * 8 6 4 11 11 H 1.48497 * 109.47055 * 330.00446 * 8 6 4 12 12 C 1.52994 * 109.47118 * 239.99608 * 2 1 3 13 13 C 1.50701 * 109.47012 * 65.00574 * 12 2 1 14 14 N 1.30936 * 126.41048 * 90.00046 * 13 12 2 15 15 C 1.35369 * 105.57850 * 180.02562 * 14 13 12 16 16 C 1.47788 * 126.44691 * 180.02562 * 15 14 13 17 17 C 1.35095 * 126.10764 * 179.97438 * 16 15 14 18 18 N 1.31340 * 114.23955 * 179.97438 * 17 16 15 19 19 C 1.29197 * 117.29684 * 359.97438 * 18 17 16 20 20 S 1.70959 * 110.35453 * 359.76428 * 19 18 17 21 21 N 1.31014 * 107.11101 * 359.97438 * 15 14 13 22 22 O 1.21291 * 110.04863 * 0.02562 * 21 15 14 23 23 H 1.09000 * 109.47127 * 300.00222 * 1 2 3 24 24 H 1.08997 * 109.46479 * 60.00376 * 1 2 3 25 25 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00564 * 179.97438 * 7 6 4 27 27 H 1.08992 * 109.47414 * 305.00218 * 12 2 1 28 28 H 1.09004 * 109.47062 * 185.00248 * 12 2 1 29 29 H 1.07995 * 122.87860 * 359.93426 * 17 16 15 30 30 H 1.07996 * 124.82588 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 6 2.0401 -0.7213 -1.2491 13 6 1.6415 0.0570 -2.4765 14 7 2.3364 1.0032 -3.0565 15 6 1.5902 1.4081 -4.1108 16 6 1.9441 2.4630 -5.0834 17 6 1.1939 2.8615 -6.1339 18 7 1.7344 3.8214 -6.8492 19 6 2.8898 4.2612 -6.4739 20 16 3.4162 3.4315 -5.0750 21 7 0.4956 0.6881 -4.1075 22 8 0.5121 -0.0894 -3.1767 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9038 -0.5274 4.4376 27 1 1.6055 -1.7198 -1.2950 28 1 3.1264 -0.7996 -1.2054 29 1 0.2327 2.4275 -6.3660 30 1 3.4425 5.0448 -6.9708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235096955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = 112.241712 kcal Electronic energy + Delta-G solvation = -17007.164603 eV Core-core repulsion = 14126.019001 eV Total energy + Delta-G solvation = -2881.145602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.36218 -39.87121 -36.16793 -35.54124 -32.93383 -31.54122 -30.15912 -27.33788 -26.29118 -25.22967 -23.71205 -22.69884 -20.35665 -19.63616 -18.80342 -17.94541 -17.12112 -16.60600 -16.04272 -14.96423 -14.73601 -14.27409 -14.17200 -14.02070 -13.73850 -12.95801 -12.49671 -12.26588 -12.06244 -11.93671 -11.72361 -11.28870 -10.97608 -10.79308 -10.46991 -10.21506 -10.00970 -9.95769 -9.52002 -9.41032 -9.21060 -8.97992 -8.66214 -6.18716 -4.20520 0.04537 0.92161 1.40645 1.43511 2.21604 2.80641 3.04924 3.21419 3.33360 3.34283 3.47022 4.06597 4.16306 4.31865 4.90052 5.04231 5.13921 5.22415 5.66234 5.74301 5.78666 5.81312 6.08774 6.14937 6.32732 6.48751 6.62215 6.92110 7.26563 7.32564 7.57137 8.24608 8.33874 8.82188 9.42172 10.93732 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.004569 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.224996 B = 6126.166827 C = 6370.245701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.015 3.985 3 H 0.036 0.964 4 C -0.519 4.519 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C -0.018 4.018 13 C 0.223 3.777 14 N -0.487 5.487 15 C 0.232 3.768 16 C -0.161 4.161 17 C 0.077 3.923 18 N -0.471 5.471 19 C 0.006 3.994 20 S 0.218 5.782 21 N -0.377 5.377 22 O 0.081 5.919 23 H 0.043 0.957 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.266 0.734 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.183 0.817 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 6.923 -16.822 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.556 4.556 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C -0.057 4.057 13 C 0.004 3.996 14 N -0.220 5.220 15 C -0.039 4.039 16 C -0.284 4.284 17 C -0.081 4.081 18 N -0.184 5.184 19 C -0.290 4.290 20 S 0.472 5.528 21 N -0.086 5.086 22 O 0.021 5.979 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.200 0.800 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.623 7.613 -17.128 18.814 hybrid contribution -1.513 0.416 0.154 1.576 sum 0.110 8.029 -16.974 18.778 Atomic orbital electron populations 1.22279 0.98827 1.01335 0.98687 1.19219 0.92176 0.97039 0.92044 0.94601 1.20816 1.32825 1.13946 0.88050 0.90151 1.24931 0.95477 0.96482 0.95768 1.69867 1.45117 1.40174 0.98033 0.86870 0.80665 0.83777 0.77052 1.20453 1.22333 1.19285 1.20691 1.03273 0.97346 0.84342 1.29545 0.81101 0.93109 0.95858 1.72131 1.29607 1.13005 1.07285 1.22382 0.89069 0.97733 0.94721 1.22845 1.01303 1.03360 1.00937 1.22089 1.01335 0.94080 0.90628 1.66314 1.09844 1.11879 1.30374 1.28726 0.96264 1.04695 0.99320 1.84301 1.16961 1.27081 1.24475 1.74950 1.20752 1.05660 1.07218 1.85303 1.38618 1.45026 1.28986 0.93819 0.95702 0.92093 0.92400 0.88196 0.87195 0.79994 0.77798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.49 37.16 0.32 -2.84 16 2 C 0.02 0.33 1.88 -91.77 -0.17 0.16 16 3 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 4 C -0.52 -13.35 9.14 -34.44 -0.31 -13.66 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 8 Si 0.89 21.29 24.37 -169.99 -4.14 17.14 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.92 16 12 C -0.02 -0.30 5.26 -27.89 -0.15 -0.45 16 13 C 0.22 3.85 6.90 -12.97 -0.09 3.76 16 14 N -0.49 -8.67 11.58 -9.88 -0.11 -8.78 16 15 C 0.23 3.87 8.05 -156.06 -1.26 2.62 16 16 C -0.16 -2.26 6.52 -36.80 -0.24 -2.50 16 17 C 0.08 0.98 11.28 -18.88 -0.21 0.76 16 18 N -0.47 -5.63 10.52 -15.48 -0.16 -5.79 16 19 C 0.01 0.05 12.22 51.65 0.63 0.68 16 20 S 0.22 2.36 23.21 -107.50 -2.50 -0.13 16 21 N -0.38 -6.40 12.18 30.98 0.38 -6.02 16 22 O 0.08 1.37 10.73 17.99 0.19 1.57 16 23 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 24 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 27 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -30.17 276.49 -5.61 -35.78 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -2.62 Total: -3.14 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.58 Total: -9.49 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.87 Total: -45.89 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.14 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.50 Total: -0.13 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.17 -5.61 -35.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.022 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds