Wall clock time and date at job start Mon Mar 30 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.50700 * 109.46917 * 119.99900 * 2 1 3 5 5 H 1.07992 * 120.00286 * 120.00024 * 4 2 1 6 6 C 1.37880 * 120.00093 * 300.00301 * 4 2 1 7 7 N 1.31509 * 120.00366 * 180.02562 * 6 4 2 8 8 Si 1.86809 * 119.99760 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46891 * 90.00485 * 8 6 4 10 10 H 1.48495 * 109.46879 * 210.00019 * 8 6 4 11 11 H 1.48497 * 109.47055 * 330.00446 * 8 6 4 12 12 C 1.52994 * 109.47118 * 239.99608 * 2 1 3 13 13 C 1.50701 * 109.47012 * 65.00574 * 12 2 1 14 14 N 1.30936 * 126.41048 * 90.00046 * 13 12 2 15 15 C 1.35369 * 105.57850 * 180.02562 * 14 13 12 16 16 C 1.47788 * 126.44691 * 180.02562 * 15 14 13 17 17 C 1.35095 * 126.10764 * 179.97438 * 16 15 14 18 18 N 1.31340 * 114.23955 * 179.97438 * 17 16 15 19 19 C 1.29197 * 117.29684 * 359.97438 * 18 17 16 20 20 S 1.70959 * 110.35453 * 359.76428 * 19 18 17 21 21 N 1.31014 * 107.11101 * 359.97438 * 15 14 13 22 22 O 1.21291 * 110.04863 * 0.02562 * 21 15 14 23 23 H 1.09000 * 109.47127 * 300.00222 * 1 2 3 24 24 H 1.08997 * 109.46479 * 60.00376 * 1 2 3 25 25 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00564 * 179.97438 * 7 6 4 27 27 H 1.08992 * 109.47414 * 305.00218 * 12 2 1 28 28 H 1.09004 * 109.47062 * 185.00248 * 12 2 1 29 29 H 1.07995 * 122.87860 * 359.93426 * 17 16 15 30 30 H 1.07996 * 124.82588 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 6 2.0401 -0.7213 -1.2491 13 6 1.6415 0.0570 -2.4765 14 7 2.3364 1.0032 -3.0565 15 6 1.5902 1.4081 -4.1108 16 6 1.9441 2.4630 -5.0834 17 6 1.1939 2.8615 -6.1339 18 7 1.7344 3.8214 -6.8492 19 6 2.8898 4.2612 -6.4739 20 16 3.4162 3.4315 -5.0750 21 7 0.4956 0.6881 -4.1075 22 8 0.5121 -0.0894 -3.1767 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9038 -0.5274 4.4376 27 1 1.6055 -1.7198 -1.2950 28 1 3.1264 -0.7996 -1.2054 29 1 0.2327 2.4275 -6.3660 30 1 3.4425 5.0448 -6.9708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235096955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:06 Heat of formation + Delta-G solvation = 90.700095 kcal Electronic energy + Delta-G solvation = -17008.098717 eV Core-core repulsion = 14126.019001 eV Total energy + Delta-G solvation = -2882.079717 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.64953 -40.76398 -37.70700 -36.92161 -34.55978 -33.21642 -31.25432 -28.82330 -27.23568 -27.11957 -24.97189 -23.94207 -21.86005 -20.77864 -19.85204 -19.28369 -18.79650 -18.03405 -17.08136 -16.81760 -15.65481 -15.56471 -15.50566 -15.09665 -14.95203 -14.79914 -14.21269 -13.70903 -13.47506 -13.26735 -13.00468 -12.72200 -12.49498 -12.36463 -12.17128 -11.83341 -11.57895 -11.17774 -11.12399 -10.85576 -10.71658 -10.33332 -10.00812 -8.28747 -6.32409 -0.88976 0.05000 0.13005 0.59184 1.10157 1.30965 1.37703 1.45298 1.72457 1.77762 2.32011 2.32475 2.93219 3.07690 3.28253 3.84112 4.10048 4.15681 4.26780 4.31423 4.43394 4.58947 4.71906 4.80395 4.86728 4.93547 5.04985 5.27764 5.57204 5.62950 6.27009 6.46042 6.74982 6.96109 7.33294 8.86999 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.004569 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.224996 B = 6126.166827 C = 6370.245701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.015 3.985 3 H 0.023 0.977 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.942 5.942 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.259 1.259 12 C -0.008 4.008 13 C 0.223 3.777 14 N -0.502 5.502 15 C 0.235 3.765 16 C -0.207 4.207 17 C 0.089 3.911 18 N -0.496 5.496 19 C 0.037 3.963 20 S 0.232 5.768 21 N -0.388 5.388 22 O 0.079 5.921 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.266 0.734 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.185 0.815 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 8.474 -18.815 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 H 0.041 0.959 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.582 5.582 8 Si 0.766 3.234 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.184 1.184 12 C -0.047 4.047 13 C 0.003 3.997 14 N -0.236 5.236 15 C -0.036 4.036 16 C -0.331 4.331 17 C -0.070 4.070 18 N -0.209 5.209 19 C -0.258 4.258 20 S 0.486 5.514 21 N -0.098 5.098 22 O 0.021 5.979 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.202 0.798 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.442 9.156 -19.133 21.260 hybrid contribution -1.355 -0.013 0.631 1.495 sum 0.088 9.143 -18.501 20.637 Atomic orbital electron populations 1.22202 0.97578 1.02222 0.98834 1.19095 0.93125 0.96129 0.92133 0.95891 1.21127 1.31297 1.12927 0.89609 0.92487 1.25644 0.96983 0.99127 0.95717 1.69991 1.47377 1.42200 0.98600 0.86020 0.79657 0.80827 0.76870 1.19296 1.22840 1.18386 1.20489 1.03657 0.97816 0.82757 1.29334 0.81380 0.93067 0.95902 1.72122 1.30218 1.13302 1.07937 1.22762 0.88488 0.97759 0.94553 1.22963 1.03644 1.04686 1.01773 1.22218 1.01234 0.93597 0.89912 1.66405 1.11153 1.12481 1.30884 1.29524 0.94981 1.03576 0.97674 1.84260 1.15505 1.26464 1.25166 1.74927 1.21222 1.06182 1.07497 1.85284 1.38374 1.45196 1.29067 0.95160 0.93904 0.90942 0.92464 0.86087 0.86722 0.79767 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 8.49 71.99 0.61 -5.29 16 2 C 0.02 0.64 1.88 -11.54 -0.02 0.62 16 3 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 4 C -0.51 -26.38 9.14 25.60 0.23 -26.15 16 5 H 0.06 3.14 7.99 -2.91 -0.02 3.12 16 6 C 0.02 1.29 5.45 84.66 0.46 1.75 16 7 N -0.94 -55.92 13.96 21.45 0.30 -55.62 16 8 Si 0.94 43.66 24.37 68.60 1.67 45.33 16 9 H -0.27 -11.86 6.87 99.48 0.68 -11.18 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 11 H -0.26 -11.58 6.53 99.48 0.65 -10.93 16 12 C -0.01 -0.28 5.26 29.85 0.16 -0.12 16 13 C 0.22 7.40 6.90 88.35 0.61 8.01 16 14 N -0.50 -17.33 11.58 -302.29 -3.50 -20.83 16 15 C 0.24 7.61 8.05 136.99 1.10 8.72 16 16 C -0.21 -5.53 6.52 24.07 0.16 -5.37 16 17 C 0.09 2.14 11.28 84.04 0.95 3.08 16 18 N -0.50 -10.53 10.52 -202.88 -2.13 -12.66 16 19 C 0.04 0.56 12.22 130.63 1.60 2.15 16 20 S 0.23 4.48 23.21 -56.49 -1.31 3.17 16 21 N -0.39 -12.77 12.18 -58.81 -0.72 -13.49 16 22 O 0.08 2.58 10.73 74.44 0.80 3.38 16 23 H 0.03 1.25 3.27 -2.39 -0.01 1.25 16 24 H 0.04 1.50 6.93 -2.39 -0.02 1.49 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 29 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.25 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -64.77 276.49 2.06 -62.71 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.10 Total: 0.63 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.86 Total: -12.61 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -6.05 Total: -102.61 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.38 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.67 Total: 45.33 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.31 Total: 3.17 kcal Total: -64.77 2.06 -62.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.413 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds