Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 5 5 H 1.07998 * 120.00413 * 120.00238 * 4 2 1 6 6 C 1.37878 * 119.99680 * 299.99561 * 4 2 1 7 7 N 1.31523 * 119.99583 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00273 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47042 * 89.99722 * 8 6 4 10 10 H 1.48506 * 109.47062 * 209.99913 * 8 6 4 11 11 H 1.48495 * 109.46994 * 329.99733 * 8 6 4 12 12 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 13 13 C 1.50703 * 109.46912 * 65.00249 * 12 2 1 14 14 N 1.30960 * 126.42670 * 89.71304 * 13 12 2 15 15 C 1.35267 * 105.57971 * 179.89572 * 14 13 12 16 16 C 1.48235 * 126.42719 * 180.11606 * 15 14 13 17 17 C 1.34917 * 122.98615 * 180.27609 * 16 15 14 18 18 S 1.76168 * 107.86871 * 179.97438 * 17 16 15 19 19 C 1.70912 * 90.44293 * 0.02562 * 18 17 16 20 20 N 1.28726 * 110.51712 * 359.72480 * 19 18 17 21 21 N 1.30865 * 107.14840 * 0.36809 * 15 14 13 22 22 O 1.21289 * 110.07934 * 359.77178 * 21 15 14 23 23 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 24 24 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 25 25 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99531 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47398 * 185.00327 * 12 2 1 28 28 H 1.09001 * 109.47194 * 305.00507 * 12 2 1 29 29 H 1.07997 * 126.06308 * 0.02944 * 17 16 15 30 30 H 1.08002 * 124.74060 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 2.1379 -0.8590 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0400 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3337 1.0070 -3.0538 15 6 1.5901 1.4077 -4.1103 16 6 1.9448 2.4666 -5.0853 17 6 1.1451 2.8151 -6.1145 18 16 1.9476 4.1019 -7.0109 19 6 3.2693 4.0497 -5.9285 20 7 3.0736 3.1589 -5.0201 21 7 0.4965 0.6891 -4.1072 22 8 0.5121 -0.0889 -3.1769 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9039 -0.5273 4.4376 27 1 3.1263 -0.7996 -1.2055 28 1 1.6053 -1.7198 -1.2951 29 1 0.1832 2.3825 -6.3470 30 1 4.1444 4.6791 -5.9949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235097091.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = 115.863090 kcal Electronic energy + Delta-G solvation = -17046.748577 eV Core-core repulsion = 14165.760010 eV Total energy + Delta-G solvation = -2880.988567 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.28713 -39.96895 -36.04714 -35.25978 -32.82147 -31.50249 -30.23150 -27.28269 -26.13932 -25.18718 -24.12033 -22.39884 -20.32992 -19.53420 -18.83047 -17.87190 -16.99981 -16.52591 -16.07027 -14.93044 -14.78654 -14.69466 -13.95464 -13.74448 -13.60945 -12.90589 -12.45006 -12.20991 -12.09826 -11.84657 -11.69525 -11.20389 -10.82090 -10.69732 -10.40585 -10.11607 -9.96559 -9.87401 -9.80425 -9.41410 -9.15417 -8.93563 -8.61404 -6.14137 -4.15390 0.22571 0.96168 1.29436 1.30879 2.05607 3.06785 3.12151 3.25075 3.34983 3.37252 3.38852 3.99629 4.36527 4.46741 4.96228 5.02267 5.18792 5.21764 5.50702 5.77520 5.85824 5.90683 6.19287 6.23472 6.38929 6.55260 6.67976 6.98158 7.32877 7.35131 7.62653 8.35378 8.39077 8.87085 9.47067 10.98405 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.004283 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.547725 B = 6535.436924 C = 6755.181437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 H 0.036 0.964 4 C -0.517 4.517 5 H 0.080 0.920 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C -0.016 4.016 13 C 0.214 3.786 14 N -0.465 5.465 15 C 0.228 3.772 16 C 0.146 3.854 17 C -0.219 4.219 18 S 0.142 5.858 19 C 0.028 3.972 20 N -0.437 5.437 21 N -0.382 5.382 22 O 0.080 5.920 23 H 0.043 0.957 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.266 0.734 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.187 0.813 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 8.108 -20.475 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C -0.055 4.055 13 C -0.005 4.005 14 N -0.197 5.197 15 C -0.044 4.044 16 C 0.014 3.986 17 C -0.361 4.361 18 S 0.394 5.606 19 C -0.272 4.272 20 N -0.149 5.149 21 N -0.091 5.091 22 O 0.019 5.981 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.204 0.796 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.642 9.000 -21.375 23.251 hybrid contribution -0.830 0.158 0.988 1.300 sum -2.472 9.158 -20.388 22.486 Atomic orbital electron populations 1.22269 0.98873 1.01266 0.98639 1.19220 0.92135 0.97110 0.92081 0.94556 1.20831 1.32693 1.13879 0.88074 0.90156 1.24934 0.95520 0.96482 0.95775 1.69879 1.45240 1.40202 0.98000 0.86865 0.80615 0.83823 0.77046 1.20484 1.22366 1.19251 1.20659 1.03259 0.97237 0.84361 1.29666 0.81211 0.93507 0.96155 1.72194 1.29111 1.11701 1.06717 1.22680 0.88892 0.97899 0.94959 1.16903 0.91115 0.96467 0.94140 1.27147 1.06134 1.03074 0.99794 1.84013 1.13309 1.32294 1.30989 1.28432 1.03782 1.00784 0.94244 1.66044 1.18925 1.06002 1.23950 1.74833 1.20832 1.05904 1.07481 1.85289 1.38803 1.44964 1.29025 0.93875 0.95707 0.92132 0.92457 0.87235 0.88307 0.79582 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.49 37.15 0.32 -2.92 16 2 C 0.01 0.33 1.88 -91.77 -0.17 0.15 16 3 H 0.04 0.88 7.20 -51.93 -0.37 0.50 16 4 C -0.52 -13.69 9.14 -34.44 -0.31 -14.00 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 8 Si 0.89 21.79 24.37 -169.99 -4.14 17.65 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.27 -6.47 6.53 56.52 0.37 -6.11 16 12 C -0.02 -0.30 5.26 -27.88 -0.15 -0.44 16 13 C 0.21 3.94 6.90 -12.98 -0.09 3.86 16 14 N -0.46 -9.17 11.58 -9.86 -0.11 -9.28 16 15 C 0.23 4.12 8.01 -156.07 -1.25 2.87 16 16 C 0.15 2.24 6.72 -84.61 -0.57 1.67 16 17 C -0.22 -2.51 11.11 29.55 0.33 -2.18 16 18 S 0.14 1.13 23.21 -107.50 -2.49 -1.37 16 19 C 0.03 0.27 12.19 51.46 0.63 0.90 16 20 N -0.44 -6.43 10.55 -12.29 -0.13 -6.56 16 21 N -0.38 -6.69 12.09 30.99 0.37 -6.31 16 22 O 0.08 1.41 10.73 18.02 0.19 1.61 16 23 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 24 H 0.02 0.47 6.93 -51.93 -0.36 0.11 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 28 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -31.94 276.37 -5.36 -37.30 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -2.62 Total: -3.29 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.37 Total: -8.09 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.90 Total: -47.98 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.94 -5.36 -37.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235097091.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.165 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds