Wall clock time and date at job start Mon Mar 30 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.50703 * 109.46941 * 120.00069 * 2 1 3 5 5 H 1.07998 * 120.00413 * 120.00238 * 4 2 1 6 6 C 1.37878 * 119.99680 * 299.99561 * 4 2 1 7 7 N 1.31523 * 119.99583 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00273 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47042 * 89.99722 * 8 6 4 10 10 H 1.48506 * 109.47062 * 209.99913 * 8 6 4 11 11 H 1.48495 * 109.46994 * 329.99733 * 8 6 4 12 12 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 13 13 C 1.50703 * 109.46912 * 65.00249 * 12 2 1 14 14 N 1.30960 * 126.42670 * 89.71304 * 13 12 2 15 15 C 1.35267 * 105.57971 * 179.89572 * 14 13 12 16 16 C 1.48235 * 126.42719 * 180.11606 * 15 14 13 17 17 C 1.34917 * 122.98615 * 180.27609 * 16 15 14 18 18 S 1.76168 * 107.86871 * 179.97438 * 17 16 15 19 19 C 1.70912 * 90.44293 * 0.02562 * 18 17 16 20 20 N 1.28726 * 110.51712 * 359.72480 * 19 18 17 21 21 N 1.30865 * 107.14840 * 0.36809 * 15 14 13 22 22 O 1.21289 * 110.07934 * 359.77178 * 21 15 14 23 23 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 24 24 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 25 25 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99531 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47398 * 185.00327 * 12 2 1 28 28 H 1.09001 * 109.47194 * 305.00507 * 12 2 1 29 29 H 1.07997 * 126.06308 * 0.02944 * 17 16 15 30 30 H 1.08002 * 124.74060 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 2.1379 -0.8590 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0400 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3337 1.0070 -3.0538 15 6 1.5901 1.4077 -4.1103 16 6 1.9448 2.4666 -5.0853 17 6 1.1451 2.8151 -6.1145 18 16 1.9476 4.1019 -7.0109 19 6 3.2693 4.0497 -5.9285 20 7 3.0736 3.1589 -5.0201 21 7 0.4965 0.6891 -4.1072 22 8 0.5121 -0.0889 -3.1769 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9039 -0.5273 4.4376 27 1 3.1263 -0.7996 -1.2055 28 1 1.6053 -1.7198 -1.2951 29 1 0.1832 2.3825 -6.3470 30 1 4.1444 4.6791 -5.9949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235097091.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:11 Heat of formation + Delta-G solvation = 91.976940 kcal Electronic energy + Delta-G solvation = -17047.784359 eV Core-core repulsion = 14165.760010 eV Total energy + Delta-G solvation = -2882.024349 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.64220 -40.85819 -37.69260 -36.69392 -34.51031 -33.19077 -31.31277 -28.81712 -27.14836 -27.07582 -25.37371 -23.72637 -21.86119 -20.79078 -19.79662 -19.27712 -18.78897 -17.92935 -17.01879 -16.82130 -15.76285 -15.74640 -15.49616 -15.36143 -14.81950 -14.36340 -14.21807 -13.72876 -13.45298 -13.15638 -12.95512 -12.85173 -12.46505 -12.33013 -12.15668 -11.82567 -11.52905 -11.14719 -11.08532 -10.76947 -10.71820 -10.62840 -9.86051 -8.29519 -6.33036 -0.65123 0.04463 0.21786 0.52609 0.84758 1.29585 1.36965 1.44806 1.72498 1.96335 2.28410 2.31854 2.74399 3.06685 3.60901 3.88944 4.09133 4.15463 4.23601 4.32303 4.42720 4.57975 4.73810 4.79105 4.80499 4.91320 5.05022 5.26989 5.56864 5.62359 6.26509 6.53241 6.73826 6.99959 7.32458 8.86321 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.004283 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.547725 B = 6535.436924 C = 6755.181437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.015 3.985 3 H 0.019 0.981 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.939 3.061 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.263 1.263 12 C -0.007 4.007 13 C 0.215 3.785 14 N -0.493 5.493 15 C 0.225 3.775 16 C 0.102 3.898 17 C -0.222 4.222 18 S 0.245 5.755 19 C 0.022 3.978 20 N -0.490 5.490 21 N -0.385 5.385 22 O 0.080 5.920 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.267 0.733 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.197 0.803 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 9.794 -23.085 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 H 0.037 0.963 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.581 5.581 8 Si 0.767 3.233 9 H -0.189 1.189 10 H -0.227 1.227 11 H -0.188 1.188 12 C -0.046 4.046 13 C -0.005 4.005 14 N -0.226 5.226 15 C -0.047 4.047 16 C -0.031 4.031 17 C -0.366 4.366 18 S 0.499 5.501 19 C -0.277 4.277 20 N -0.204 5.204 21 N -0.094 5.094 22 O 0.021 5.979 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.214 0.786 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.595 10.688 -24.016 26.415 hybrid contribution -0.477 -0.290 1.595 1.690 sum -3.072 10.399 -22.421 24.905 Atomic orbital electron populations 1.22182 0.97359 1.02306 0.98827 1.19089 0.93312 0.95930 0.92172 0.96330 1.21129 1.31325 1.12923 0.89628 0.92504 1.25652 0.97022 0.99150 0.95687 1.70001 1.47380 1.42179 0.98579 0.86000 0.79790 0.80720 0.76754 1.18933 1.22717 1.18802 1.20465 1.03444 0.97861 0.82820 1.29439 0.81523 0.93347 0.96164 1.72180 1.30224 1.12375 1.07839 1.23262 0.88383 0.98228 0.94863 1.16979 0.92933 0.97684 0.95471 1.27492 1.06250 1.03741 0.99113 1.83687 1.10147 1.28620 1.27651 1.29044 1.05487 0.99570 0.93558 1.66013 1.19727 1.07996 1.26670 1.74792 1.20894 1.06165 1.07558 1.85264 1.38380 1.45138 1.29104 0.95116 0.93931 0.90743 0.92432 0.87152 0.85896 0.78564 0.74240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 8.49 71.98 0.61 -5.45 16 2 C 0.02 0.67 1.88 -11.54 -0.02 0.64 16 3 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 4 C -0.51 -27.37 9.14 25.60 0.23 -27.13 16 5 H 0.06 3.24 7.99 -2.91 -0.02 3.21 16 6 C 0.02 1.30 5.45 84.65 0.46 1.76 16 7 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 8 Si 0.94 44.93 24.37 68.60 1.67 46.61 16 9 H -0.26 -11.90 6.87 99.48 0.68 -11.22 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.26 -12.29 6.53 99.48 0.65 -11.64 16 12 C -0.01 -0.26 5.26 29.85 0.16 -0.10 16 13 C 0.21 7.80 6.90 88.36 0.61 8.41 16 14 N -0.49 -19.48 11.58 -302.35 -3.50 -22.98 16 15 C 0.23 8.06 8.01 137.20 1.10 9.16 16 16 C 0.10 3.03 6.72 40.93 0.27 3.30 16 17 C -0.22 -4.61 11.11 67.06 0.74 -3.87 16 18 S 0.25 2.97 23.21 -56.49 -1.31 1.66 16 19 C 0.02 0.37 12.19 130.70 1.59 1.96 16 20 N -0.49 -13.94 10.55 -192.80 -2.03 -15.97 16 21 N -0.38 -13.18 12.09 -58.96 -0.71 -13.89 16 22 O 0.08 2.76 10.73 74.53 0.80 3.56 16 23 H 0.03 1.31 3.27 -2.38 -0.01 1.30 16 24 H 0.04 1.56 6.93 -2.39 -0.02 1.54 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -70.45 276.37 2.08 -68.37 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.10 Total: 0.70 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.76 Total: -11.32 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -5.95 Total: -109.57 kcal Atomic # 8 Polarization: 2.76 SS G_CDS: 0.80 Total: 3.56 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.61 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.66 kcal Total: -70.45 2.08 -68.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235097091.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.348 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds