Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53001 * 109.47193 * 119.99786 * 2 1 3 5 5 C 1.50696 * 109.47269 * 295.00380 * 4 2 1 6 6 H 1.08000 * 120.00277 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00361 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99601 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46815 * 90.00459 * 9 7 5 11 11 H 1.48501 * 109.46878 * 210.00340 * 9 7 5 12 12 H 1.48493 * 109.47206 * 330.00208 * 9 7 5 13 13 C 1.50703 * 109.47284 * 239.99868 * 2 1 3 14 14 N 1.30957 * 126.42664 * 120.02623 * 13 2 1 15 15 C 1.35262 * 105.58293 * 180.02562 * 14 13 2 16 16 C 1.48235 * 126.43194 * 179.97438 * 15 14 13 17 17 C 1.34915 * 122.98727 * 180.02562 * 16 15 14 18 18 S 1.76171 * 107.86844 * 180.02562 * 17 16 15 19 19 C 1.70907 * 90.44393 * 359.97438 * 18 17 16 20 20 N 1.28739 * 110.51516 * 359.73523 * 19 18 17 21 21 N 1.30868 * 107.14878 * 359.97438 * 15 14 13 22 22 O 1.21293 * 110.07635 * 359.97438 * 21 15 14 23 23 H 1.08995 * 109.47465 * 300.00033 * 1 2 3 24 24 H 1.09002 * 109.47281 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46814 * 55.00112 * 4 2 1 27 27 H 1.09002 * 109.47563 * 175.00126 * 4 2 1 28 28 H 0.96998 * 120.00569 * 179.97438 * 8 7 5 29 29 H 1.08006 * 126.06495 * 0.02562 * 17 16 15 30 30 H 1.08002 * 124.74311 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0805 0.9745 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 1.6456 0.2778 4.7994 9 14 2.9636 -1.9883 3.9028 10 1 4.4170 -1.6847 3.8781 11 1 2.6163 -2.6419 5.1902 12 1 2.6290 -2.8993 2.7790 13 6 2.0323 -0.7104 -1.2305 14 7 2.7887 -0.1991 -2.1693 15 6 2.9825 -1.1958 -3.0629 16 6 3.7757 -1.1158 -4.3126 17 6 3.9230 -2.1576 -5.1571 18 16 4.9334 -1.6269 -6.4992 19 6 5.0603 -0.0702 -5.8054 20 7 4.3984 -0.0123 -4.7027 21 7 2.3385 -2.2443 -2.6172 22 8 1.7901 -1.9811 -1.5678 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2057 28 1 1.8929 -0.0451 5.6800 29 1 3.4970 -3.1423 -5.0325 30 1 5.6149 0.7514 -6.2342 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235103273.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = 108.256817 kcal Electronic energy + Delta-G solvation = -16913.846183 eV Core-core repulsion = 14032.527783 eV Total energy + Delta-G solvation = -2881.318400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.29100 -39.98430 -36.08512 -35.27082 -32.69410 -31.64028 -30.06642 -27.74125 -26.27343 -24.56673 -24.09319 -22.42845 -20.85669 -19.41015 -18.58361 -17.81637 -17.17067 -16.54354 -16.07264 -14.83441 -14.73186 -14.67883 -14.12850 -13.67857 -13.60956 -12.84773 -12.33815 -12.23544 -12.13221 -11.72637 -11.52790 -11.15800 -10.97664 -10.76308 -10.52313 -10.21810 -9.98746 -9.87532 -9.86448 -9.71176 -9.30840 -8.95755 -8.61698 -6.12259 -4.12312 0.21319 0.94731 1.28047 1.30303 2.03787 3.05261 3.11565 3.27965 3.33417 3.35923 3.39367 3.95785 4.39112 4.45113 4.94742 4.99366 5.19548 5.20980 5.47238 5.62007 5.70696 5.82032 6.13300 6.14665 6.44343 6.50350 6.80605 6.98926 7.15706 7.32789 7.62387 8.34006 8.40176 8.89785 9.48517 11.00128 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.004064 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.938462 B = 6887.984445 C = 7076.685054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 H 0.114 0.886 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.217 3.783 14 N -0.469 5.469 15 C 0.227 3.773 16 C 0.146 3.854 17 C -0.218 4.218 18 S 0.143 5.857 19 C 0.027 3.973 20 N -0.437 5.437 21 N -0.381 5.381 22 O 0.084 5.916 23 H 0.091 0.909 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.187 0.813 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -4.261 -21.568 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 H 0.132 0.868 4 C -0.047 4.047 5 C -0.558 4.558 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.003 4.003 14 N -0.201 5.201 15 C -0.045 4.045 16 C 0.014 3.986 17 C -0.361 4.361 18 S 0.395 5.605 19 C -0.273 4.273 20 N -0.150 5.150 21 N -0.089 5.089 22 O 0.024 5.976 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.204 0.796 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.068 -4.619 -22.609 23.626 hybrid contribution 0.146 -0.797 1.115 1.378 sum 5.215 -5.416 -21.494 22.771 Atomic orbital electron populations 1.21806 0.92420 1.02672 1.02602 1.20185 0.96964 0.98947 0.85079 0.86806 1.19735 0.96395 0.96761 0.91777 1.20912 1.36577 1.09871 0.88485 0.90141 1.24930 0.95329 0.96821 0.95815 1.69881 1.46419 1.39067 0.98134 0.86881 0.80812 0.84439 0.77872 1.20219 1.21138 1.18854 1.29733 0.91535 0.81350 0.97637 1.72192 1.17007 1.28303 1.02561 1.22672 0.99500 0.86447 0.95891 1.16891 0.99876 0.88876 0.92982 1.27158 1.06127 1.04784 0.98040 1.84018 1.44458 1.08530 1.23474 1.28429 1.02704 1.01410 0.94763 1.66046 1.08218 1.27243 1.13483 1.74861 1.12856 1.22598 0.98606 1.85271 1.53952 1.30343 1.28081 0.89022 0.93742 0.92296 0.95259 0.96397 0.92512 0.79557 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.98 37.16 0.33 -1.97 16 2 C 0.01 0.16 2.81 -91.77 -0.26 -0.09 16 3 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 4 C -0.01 -0.19 3.50 -27.88 -0.10 -0.29 16 5 C -0.52 -13.77 8.96 -34.44 -0.31 -14.08 16 6 H 0.08 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 9 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.22 4.11 7.00 -12.98 -0.09 4.02 16 14 N -0.47 -9.21 11.58 -9.86 -0.11 -9.33 16 15 C 0.23 4.12 8.01 -156.07 -1.25 2.87 16 16 C 0.15 2.22 6.72 -84.62 -0.57 1.65 16 17 C -0.22 -2.49 11.11 29.55 0.33 -2.16 16 18 S 0.14 1.12 23.21 -107.50 -2.49 -1.38 16 19 C 0.03 0.26 12.19 51.47 0.63 0.88 16 20 N -0.44 -6.32 10.55 -12.29 -0.13 -6.45 16 21 N -0.38 -6.83 12.09 30.99 0.37 -6.46 16 22 O 0.08 1.56 11.29 18.02 0.20 1.77 16 23 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 27 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.19 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -31.57 283.52 -5.96 -37.52 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.79 Total: -3.41 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.38 Total: -7.21 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.90 Total: -47.99 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.20 Total: 1.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.57 -5.96 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235103273.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.782 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds