Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53001 * 109.47193 * 119.99786 * 2 1 3 5 5 C 1.50696 * 109.47269 * 295.00380 * 4 2 1 6 6 H 1.08000 * 120.00277 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00361 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99601 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46815 * 90.00459 * 9 7 5 11 11 H 1.48501 * 109.46878 * 210.00340 * 9 7 5 12 12 H 1.48493 * 109.47206 * 330.00208 * 9 7 5 13 13 C 1.50703 * 109.47284 * 239.99868 * 2 1 3 14 14 N 1.30957 * 126.42664 * 120.02623 * 13 2 1 15 15 C 1.35262 * 105.58293 * 180.02562 * 14 13 2 16 16 C 1.48235 * 126.43194 * 179.97438 * 15 14 13 17 17 C 1.34915 * 122.98727 * 180.02562 * 16 15 14 18 18 S 1.76171 * 107.86844 * 180.02562 * 17 16 15 19 19 C 1.70907 * 90.44393 * 359.97438 * 18 17 16 20 20 N 1.28739 * 110.51516 * 359.73523 * 19 18 17 21 21 N 1.30868 * 107.14878 * 359.97438 * 15 14 13 22 22 O 1.21293 * 110.07635 * 359.97438 * 21 15 14 23 23 H 1.08995 * 109.47465 * 300.00033 * 1 2 3 24 24 H 1.09002 * 109.47281 * 59.99957 * 1 2 3 25 25 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46814 * 55.00112 * 4 2 1 27 27 H 1.09002 * 109.47563 * 175.00126 * 4 2 1 28 28 H 0.96998 * 120.00569 * 179.97438 * 8 7 5 29 29 H 1.08006 * 126.06495 * 0.02562 * 17 16 15 30 30 H 1.08002 * 124.74311 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0805 0.9745 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 1.6456 0.2778 4.7994 9 14 2.9636 -1.9883 3.9028 10 1 4.4170 -1.6847 3.8781 11 1 2.6163 -2.6419 5.1902 12 1 2.6290 -2.8993 2.7790 13 6 2.0323 -0.7104 -1.2305 14 7 2.7887 -0.1991 -2.1693 15 6 2.9825 -1.1958 -3.0629 16 6 3.7757 -1.1158 -4.3126 17 6 3.9230 -2.1576 -5.1571 18 16 4.9334 -1.6269 -6.4992 19 6 5.0603 -0.0702 -5.8054 20 7 4.3984 -0.0123 -4.7027 21 7 2.3385 -2.2443 -2.6172 22 8 1.7901 -1.9811 -1.5678 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2057 28 1 1.8929 -0.0451 5.6800 29 1 3.4970 -3.1423 -5.0325 30 1 5.6149 0.7514 -6.2342 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235103273.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = 85.595045 kcal Electronic energy + Delta-G solvation = -16914.828871 eV Core-core repulsion = 14032.527783 eV Total energy + Delta-G solvation = -2882.301088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.67409 -40.86546 -37.66806 -36.69215 -34.58244 -33.07943 -31.17523 -29.53547 -27.22002 -26.11250 -25.33070 -24.00377 -22.24862 -20.52175 -19.62034 -19.24128 -19.08588 -17.90507 -17.02080 -16.47205 -15.98267 -15.74745 -15.66601 -15.24785 -14.66186 -14.36334 -14.04163 -13.71629 -13.24870 -13.05270 -12.94812 -12.87957 -12.58968 -12.25146 -12.06005 -11.98935 -11.70578 -11.36991 -11.18529 -10.77716 -10.74856 -10.63482 -9.87580 -8.26382 -6.29758 -0.66277 0.01379 0.20972 0.52428 0.81873 1.36639 1.39456 1.48950 1.68171 1.94669 2.25426 2.36891 2.66386 3.08922 3.59826 3.81069 4.03603 4.13908 4.17604 4.23436 4.37647 4.62128 4.70784 4.82291 4.94322 5.01347 5.15912 5.31765 5.45260 5.60583 6.27072 6.52050 6.76664 6.95431 7.33892 8.88980 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.004064 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.938462 B = 6887.984445 C = 7076.685054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.016 3.984 3 H 0.110 0.890 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.943 5.943 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.217 3.783 14 N -0.491 5.491 15 C 0.228 3.772 16 C 0.102 3.898 17 C -0.223 4.223 18 S 0.247 5.753 19 C 0.023 3.977 20 N -0.489 5.489 21 N -0.385 5.385 22 O 0.077 5.923 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.013 0.987 28 H 0.267 0.733 29 H 0.196 0.804 30 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 -5.638 -24.402 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.004 4.004 3 H 0.128 0.872 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.172 1.172 13 C -0.003 4.003 14 N -0.223 5.223 15 C -0.045 4.045 16 C -0.030 4.030 17 C -0.366 4.366 18 S 0.501 5.499 19 C -0.276 4.276 20 N -0.203 5.203 21 N -0.095 5.095 22 O 0.019 5.981 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.213 0.787 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.265 -6.007 -25.465 26.903 hybrid contribution -0.157 -0.336 1.775 1.813 sum 6.108 -6.343 -23.690 25.274 Atomic orbital electron populations 1.21750 0.90692 1.03393 1.03041 1.19973 0.98358 0.98223 0.83869 0.87213 1.19616 0.96066 0.96775 0.91808 1.21179 1.35206 1.09172 0.89951 0.92545 1.25735 0.96615 1.00123 0.95646 1.70008 1.48431 1.41125 0.98742 0.85946 0.79295 0.80870 0.78358 1.19969 1.20735 1.17244 1.29482 0.91681 0.81625 0.97538 1.72179 1.17428 1.29401 1.03325 1.23283 0.98991 0.85654 0.96556 1.16945 1.02144 0.90706 0.93244 1.27500 1.05797 1.04451 0.98886 1.83701 1.41009 1.05582 1.19639 1.29059 1.01253 1.03697 0.93571 1.66013 1.10245 1.28014 1.16017 1.74821 1.13503 1.22637 0.98574 1.85247 1.54332 1.30012 1.28528 0.90385 0.91442 0.91438 0.94671 0.96909 0.92434 0.78661 0.74115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.98 71.98 0.65 -3.69 16 2 C 0.02 0.62 2.81 -11.54 -0.03 0.58 16 3 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 4 C 0.00 -0.20 3.50 29.85 0.10 -0.09 16 5 C -0.52 -27.78 8.96 25.60 0.23 -27.55 16 6 H 0.06 3.23 7.30 -2.91 -0.02 3.21 16 7 C 0.02 0.94 5.47 84.66 0.46 1.40 16 8 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 9 Si 0.93 43.37 27.47 68.60 1.88 45.25 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 13 C 0.22 8.17 7.00 88.36 0.62 8.79 16 14 N -0.49 -19.35 11.58 -302.35 -3.50 -22.85 16 15 C 0.23 8.20 8.01 137.20 1.10 9.30 16 16 C 0.10 3.01 6.72 40.93 0.27 3.28 16 17 C -0.22 -4.59 11.11 67.06 0.74 -3.85 16 18 S 0.25 2.89 23.21 -56.49 -1.31 1.58 16 19 C 0.02 0.37 12.19 130.70 1.59 1.96 16 20 N -0.49 -13.53 10.55 -192.80 -2.03 -15.56 16 21 N -0.39 -13.65 12.09 -58.95 -0.71 -14.36 16 22 O 0.08 2.81 11.29 74.55 0.84 3.65 16 23 H 0.08 2.80 6.95 -2.39 -0.02 2.78 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 27 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.62 283.52 2.33 -67.30 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.12 Total: 1.51 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.74 Total: -9.86 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -5.95 Total: -109.43 kcal Atomic # 8 Polarization: 2.81 SS G_CDS: 0.84 Total: 3.65 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.31 Total: 1.58 kcal Total: -69.62 2.33 -67.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235103273.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.894 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds