Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50696 * 109.47163 * 239.99901 * 2 1 3 5 5 H 1.08001 * 119.99982 * 245.45422 * 4 2 1 6 6 C 1.37878 * 120.00229 * 65.45567 * 4 2 1 7 7 N 1.31513 * 119.99664 * 9.56604 * 6 4 2 8 8 Si 1.86801 * 120.00056 * 189.56655 * 6 4 2 9 9 H 1.48494 * 109.47254 * 84.99300 * 8 6 4 10 10 H 1.48499 * 109.47212 * 204.99543 * 8 6 4 11 11 H 1.48497 * 109.46913 * 324.99400 * 8 6 4 12 12 C 1.53004 * 109.47257 * 119.99648 * 2 1 3 13 13 C 1.50702 * 109.46804 * 295.00301 * 12 2 1 14 14 N 1.30929 * 126.41016 * 90.00483 * 13 12 2 15 15 C 1.35376 * 105.58104 * 179.97438 * 14 13 12 16 16 C 1.47791 * 126.44703 * 179.97438 * 15 14 13 17 17 C 1.35090 * 126.10516 * 180.02562 * 16 15 14 18 18 N 1.31339 * 114.24353 * 180.02562 * 17 16 15 19 19 C 1.29200 * 117.28819 * 359.97438 * 18 17 16 20 20 S 1.70953 * 110.35874 * 359.72570 * 19 18 17 21 21 N 1.31004 * 107.10681 * 359.97438 * 15 14 13 22 22 O 1.21291 * 110.05274 * 359.74636 * 21 15 14 23 23 H 1.09001 * 109.46690 * 304.14032 * 1 2 3 24 24 H 1.08997 * 109.46923 * 64.13822 * 1 2 3 25 25 H 1.08994 * 109.46857 * 184.14112 * 1 2 3 26 26 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46645 * 54.99728 * 12 2 1 28 28 H 1.08994 * 109.47258 * 175.00202 * 12 2 1 29 29 H 1.08001 * 122.88021 * 359.97438 * 17 16 15 30 30 H 1.08004 * 124.81848 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7946 -0.1775 -2.4796 7 7 1.2993 1.0355 -2.5935 8 14 2.1758 -1.1783 -4.0101 9 1 1.0238 -2.0612 -4.3238 10 1 2.4225 -0.2618 -5.1522 11 1 3.3842 -2.0076 -3.7709 12 6 2.0401 -0.7212 1.2493 13 6 1.6413 0.0572 2.4766 14 7 0.5354 -0.0863 3.1625 15 6 0.6122 0.8158 4.1690 16 6 -0.3996 1.0450 5.2217 17 6 -0.3160 1.9479 6.2230 18 7 -1.3512 1.9541 7.0314 19 6 -2.3037 1.1180 6.7804 20 16 -1.9338 0.1949 5.3900 21 7 1.7520 1.4473 4.0344 22 8 2.3536 1.0190 3.0722 23 1 -0.3633 0.5768 0.8506 24 1 -0.3633 0.4483 -0.9247 25 1 -0.3633 -1.0249 0.0742 26 1 1.1317 1.4103 -3.4724 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7994 1.2057 29 1 0.5299 2.6075 6.3486 30 1 -3.2076 1.0200 7.3633 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235406326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = 103.669075 kcal Electronic energy + Delta-G solvation = -16936.311858 eV Core-core repulsion = 14054.794518 eV Total energy + Delta-G solvation = -2881.517340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.21489 -39.79508 -36.02188 -35.24090 -32.87942 -31.16191 -29.99668 -26.77453 -26.21813 -25.19795 -23.55965 -22.59856 -20.41255 -19.54475 -18.61002 -17.81005 -16.81090 -16.34324 -15.94251 -14.70191 -14.65153 -14.22261 -14.16668 -14.04401 -13.18616 -12.77624 -12.42848 -11.93403 -11.74861 -11.66136 -11.41468 -10.97495 -10.78490 -10.72204 -10.42169 -10.31102 -9.98425 -9.92973 -9.51769 -9.31681 -9.06089 -8.86075 -8.43890 -6.12942 -4.17001 0.13038 0.99780 1.50928 1.54994 2.32463 2.91260 3.19017 3.26784 3.33978 3.35607 3.59115 4.13880 4.28353 4.37734 4.97224 5.15997 5.21489 5.34184 5.80639 5.89712 5.93572 6.10250 6.25025 6.45388 6.77149 7.00543 7.11200 7.39783 7.57716 7.74517 7.87535 8.22038 8.38557 8.85317 9.47575 10.96400 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.041532 B = 0.004100 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.021603 B = 6827.202337 C = 7128.477288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.028 4.028 13 C 0.228 3.772 14 N -0.486 5.486 15 C 0.230 3.770 16 C -0.157 4.157 17 C 0.074 3.926 18 N -0.471 5.471 19 C 0.003 3.997 20 S 0.217 5.783 21 N -0.378 5.378 22 O 0.079 5.921 23 H 0.012 0.988 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.183 0.817 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -2.028 14.508 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.058 0.942 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.067 4.067 13 C 0.009 3.991 14 N -0.219 5.219 15 C -0.041 4.041 16 C -0.280 4.280 17 C -0.083 4.083 18 N -0.184 5.184 19 C -0.292 4.292 20 S 0.470 5.530 21 N -0.087 5.087 22 O 0.019 5.981 23 H 0.031 0.969 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.200 0.800 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.680 -1.892 14.948 16.102 hybrid contribution 0.854 0.144 -0.896 1.246 sum -4.826 -1.748 14.051 14.960 Atomic orbital electron populations 1.21769 0.98259 0.98937 0.99896 1.18761 0.92953 0.96623 0.88850 0.94213 1.20961 1.36613 1.08355 0.90042 0.92054 1.24938 0.94980 0.94562 0.99100 1.69970 1.44266 1.13920 1.24015 0.86602 0.78801 0.80074 0.82506 1.20488 1.21313 1.19801 1.20929 1.02704 0.97367 0.85690 1.29534 0.85161 0.88162 0.96223 1.72143 1.21265 1.22733 1.05792 1.22379 0.92643 0.93687 0.95387 1.22844 0.98915 1.05799 1.00484 1.22083 0.97882 0.98296 0.90085 1.66310 1.01271 1.21969 1.28831 1.28703 1.02809 0.97138 1.00582 1.84267 1.09836 1.35655 1.23230 1.74936 1.08076 1.20695 1.05026 1.85284 1.41561 1.41548 1.29719 0.96896 0.91567 0.94827 0.92762 0.88121 0.88689 0.80008 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.81 37.16 0.33 -2.68 16 2 C 0.05 1.10 2.15 -91.77 -0.20 0.90 16 3 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 4 C -0.52 -13.17 8.48 -34.44 -0.29 -13.47 16 5 H 0.06 1.48 7.77 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.17 -17.82 -0.09 1.67 16 7 N -0.88 -24.52 12.16 55.43 0.67 -23.84 16 8 Si 0.89 20.21 29.55 -169.99 -5.02 15.19 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C -0.03 -0.51 5.26 -27.88 -0.15 -0.66 16 13 C 0.23 4.19 6.96 -12.98 -0.09 4.10 16 14 N -0.49 -8.99 11.03 -9.88 -0.11 -9.10 16 15 C 0.23 4.03 8.05 -156.06 -1.26 2.77 16 16 C -0.16 -2.32 6.52 -36.80 -0.24 -2.56 16 17 C 0.07 1.00 11.28 -18.88 -0.21 0.78 16 18 N -0.47 -5.89 10.52 -15.48 -0.16 -6.05 16 19 C 0.00 0.03 12.22 51.66 0.63 0.66 16 20 S 0.22 2.46 23.21 -107.50 -2.50 -0.03 16 21 N -0.38 -6.81 12.18 30.98 0.38 -6.43 16 22 O 0.08 1.44 11.29 17.99 0.20 1.64 16 23 H 0.01 0.27 7.08 -51.93 -0.37 -0.10 16 24 H 0.07 1.69 6.82 -51.93 -0.35 1.33 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.18 2.26 8.06 -52.49 -0.42 1.83 16 30 H 0.20 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 284.77 15.07 4.29 4.29 Total: -1.00 -29.03 284.77 -6.61 -35.65 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -2.80 Total: -2.84 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.57 Total: -8.47 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.78 Total: -45.43 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.50 Total: -0.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.03 -6.61 -35.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.316 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds