Wall clock time and date at job start Mon Mar 30 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.50696 * 109.47163 * 239.99901 * 2 1 3 5 5 H 1.08001 * 119.99982 * 245.45422 * 4 2 1 6 6 C 1.37878 * 120.00229 * 65.45567 * 4 2 1 7 7 N 1.31513 * 119.99664 * 9.56604 * 6 4 2 8 8 Si 1.86801 * 120.00056 * 189.56655 * 6 4 2 9 9 H 1.48494 * 109.47254 * 84.99300 * 8 6 4 10 10 H 1.48499 * 109.47212 * 204.99543 * 8 6 4 11 11 H 1.48497 * 109.46913 * 324.99400 * 8 6 4 12 12 C 1.53004 * 109.47257 * 119.99648 * 2 1 3 13 13 C 1.50702 * 109.46804 * 295.00301 * 12 2 1 14 14 N 1.30929 * 126.41016 * 90.00483 * 13 12 2 15 15 C 1.35376 * 105.58104 * 179.97438 * 14 13 12 16 16 C 1.47791 * 126.44703 * 179.97438 * 15 14 13 17 17 C 1.35090 * 126.10516 * 180.02562 * 16 15 14 18 18 N 1.31339 * 114.24353 * 180.02562 * 17 16 15 19 19 C 1.29200 * 117.28819 * 359.97438 * 18 17 16 20 20 S 1.70953 * 110.35874 * 359.72570 * 19 18 17 21 21 N 1.31004 * 107.10681 * 359.97438 * 15 14 13 22 22 O 1.21291 * 110.05274 * 359.74636 * 21 15 14 23 23 H 1.09001 * 109.46690 * 304.14032 * 1 2 3 24 24 H 1.08997 * 109.46923 * 64.13822 * 1 2 3 25 25 H 1.08994 * 109.46857 * 184.14112 * 1 2 3 26 26 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46645 * 54.99728 * 12 2 1 28 28 H 1.08994 * 109.47258 * 175.00202 * 12 2 1 29 29 H 1.08001 * 122.88021 * 359.97438 * 17 16 15 30 30 H 1.08004 * 124.81848 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7946 -0.1775 -2.4796 7 7 1.2993 1.0355 -2.5935 8 14 2.1758 -1.1783 -4.0101 9 1 1.0238 -2.0612 -4.3238 10 1 2.4225 -0.2618 -5.1522 11 1 3.3842 -2.0076 -3.7709 12 6 2.0401 -0.7212 1.2493 13 6 1.6413 0.0572 2.4766 14 7 0.5354 -0.0863 3.1625 15 6 0.6122 0.8158 4.1690 16 6 -0.3996 1.0450 5.2217 17 6 -0.3160 1.9479 6.2230 18 7 -1.3512 1.9541 7.0314 19 6 -2.3037 1.1180 6.7804 20 16 -1.9338 0.1949 5.3900 21 7 1.7520 1.4473 4.0344 22 8 2.3536 1.0190 3.0722 23 1 -0.3633 0.5768 0.8506 24 1 -0.3633 0.4483 -0.9247 25 1 -0.3633 -1.0249 0.0742 26 1 1.1317 1.4103 -3.4724 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7994 1.2057 29 1 0.5299 2.6075 6.3486 30 1 -3.2076 1.0200 7.3633 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235406326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:07 Heat of formation + Delta-G solvation = 84.746813 kcal Electronic energy + Delta-G solvation = -16937.132389 eV Core-core repulsion = 14054.794518 eV Total energy + Delta-G solvation = -2882.337871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.59117 -40.75023 -37.59698 -36.74934 -34.50843 -32.78962 -31.20231 -28.39871 -27.26624 -27.11036 -24.86632 -23.94919 -21.97868 -20.71801 -19.72836 -19.23279 -18.37845 -17.96524 -17.04978 -16.54347 -15.83200 -15.63915 -15.19066 -14.96925 -14.83015 -14.44692 -13.96117 -13.57558 -13.17051 -13.09978 -12.76194 -12.70982 -12.54060 -12.24676 -12.15459 -11.96146 -11.72036 -11.07057 -10.96897 -10.84209 -10.43789 -10.31053 -9.99180 -8.12157 -6.21466 -0.86925 0.06479 0.18310 0.60598 1.14390 1.48611 1.50372 1.58615 1.78973 1.80188 2.35749 2.49010 2.98497 3.21579 3.29575 3.90538 4.12733 4.28614 4.38668 4.47341 4.54492 4.77647 4.83374 4.94989 5.01131 5.12793 5.27805 5.62532 5.82705 5.93338 6.27256 6.47234 6.89759 7.00105 7.46832 8.97463 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.041532 B = 0.004100 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.021603 B = 6827.202337 C = 7128.477288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.046 3.954 3 H 0.005 0.995 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.261 1.261 12 C -0.016 4.016 13 C 0.224 3.776 14 N -0.496 5.496 15 C 0.236 3.764 16 C -0.206 4.206 17 C 0.087 3.913 18 N -0.495 5.495 19 C 0.036 3.964 20 S 0.235 5.765 21 N -0.392 5.392 22 O 0.069 5.931 23 H 0.015 0.985 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.184 0.816 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -3.352 15.691 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.026 3.974 3 H 0.023 0.977 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.185 1.185 12 C -0.055 4.055 13 C 0.005 3.995 14 N -0.230 5.230 15 C -0.036 4.036 16 C -0.329 4.329 17 C -0.071 4.071 18 N -0.209 5.209 19 C -0.259 4.259 20 S 0.489 5.511 21 N -0.104 5.104 22 O 0.012 5.988 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.201 0.799 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.512 -3.241 16.123 17.688 hybrid contribution 0.997 0.589 -1.119 1.610 sum -5.516 -2.652 15.004 16.204 Atomic orbital electron populations 1.21592 0.98331 0.99238 0.98297 1.18640 0.92849 0.95143 0.90772 0.97709 1.21398 1.35914 1.08595 0.90763 0.90812 1.25742 0.95137 0.95341 1.02206 1.70109 1.45965 1.15609 1.24387 0.85611 0.78980 0.78559 0.78780 1.20150 1.21827 1.18480 1.20720 1.03916 0.97267 0.83567 1.29465 0.85377 0.88278 0.96391 1.72124 1.21237 1.23343 1.06265 1.22799 0.92781 0.92646 0.95342 1.22965 1.00432 1.08410 1.01134 1.22201 0.98125 0.97362 0.89448 1.66405 1.01850 1.23441 1.29181 1.29531 1.02860 0.94330 0.99150 1.84194 1.07811 1.35279 1.23795 1.74909 1.08755 1.21372 1.05361 1.85261 1.41843 1.41653 1.30028 0.96627 0.94647 0.93661 0.93075 0.86445 0.86763 0.79940 0.73298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.81 71.98 0.63 -4.78 16 2 C 0.05 2.12 2.15 -11.54 -0.02 2.10 16 3 H 0.00 0.25 8.09 -2.38 -0.02 0.23 16 4 C -0.53 -26.45 8.48 25.60 0.22 -26.23 16 5 H 0.07 3.44 7.77 -2.91 -0.02 3.41 16 6 C 0.01 0.78 5.17 84.65 0.44 1.22 16 7 N -0.92 -52.19 12.16 21.45 0.26 -51.93 16 8 Si 0.95 41.23 29.55 68.60 2.03 43.26 16 9 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 C -0.02 -0.57 5.26 29.85 0.16 -0.41 16 13 C 0.22 8.17 6.96 88.35 0.61 8.79 16 14 N -0.50 -18.12 11.03 -302.31 -3.33 -21.46 16 15 C 0.24 8.20 8.05 136.99 1.10 9.31 16 16 C -0.21 -5.89 6.52 24.07 0.16 -5.74 16 17 C 0.09 2.26 11.28 84.04 0.95 3.21 16 18 N -0.50 -11.23 10.52 -202.88 -2.13 -13.36 16 19 C 0.04 0.58 12.22 130.63 1.60 2.18 16 20 S 0.23 4.83 23.21 -56.49 -1.31 3.52 16 21 N -0.39 -14.26 12.18 -58.83 -0.72 -14.98 16 22 O 0.07 2.54 11.29 74.42 0.84 3.38 16 23 H 0.01 0.67 7.08 -2.39 -0.02 0.65 16 24 H 0.03 1.83 6.82 -2.39 -0.02 1.81 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -62.84 284.77 2.64 -60.20 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.17 Total: 1.73 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.84 Total: -10.37 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -5.92 Total: -101.73 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.84 Total: 3.38 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.31 Total: 3.52 kcal Total: -62.84 2.64 -60.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.948 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds