Wall clock time and date at job start Mon Mar 30 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.50695 * 109.47427 * 239.99808 * 2 1 3 5 5 H 1.07997 * 120.00519 * 240.00123 * 4 2 1 6 6 C 1.37888 * 119.99951 * 59.99760 * 4 2 1 7 7 N 1.31512 * 119.99548 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47475 * 90.00222 * 8 6 4 10 10 H 1.48507 * 109.46928 * 209.99931 * 8 6 4 11 11 H 1.48502 * 109.47239 * 329.99911 * 8 6 4 12 12 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 13 13 C 1.50706 * 109.47238 * 294.99946 * 12 2 1 14 14 N 1.30965 * 126.42090 * 90.00024 * 13 12 2 15 15 C 1.35270 * 105.57423 * 179.97438 * 14 13 12 16 16 C 1.48241 * 126.42101 * 180.02562 * 15 14 13 17 17 C 1.34925 * 122.97802 * 179.97438 * 16 15 14 18 18 S 1.76171 * 107.86221 * 179.97438 * 17 16 15 19 19 C 1.70910 * 90.44523 * 0.02562 * 18 17 16 20 20 N 1.28732 * 110.51631 * 359.76685 * 19 18 17 21 21 N 1.30864 * 107.15004 * 0.02562 * 15 14 13 22 22 O 1.21290 * 110.07883 * 359.74560 * 21 15 14 23 23 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 24 24 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 26 26 H 0.97002 * 119.99896 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46832 * 175.00260 * 12 2 1 28 28 H 1.09000 * 109.47611 * 55.00557 * 12 2 1 29 29 H 1.08002 * 126.06418 * 0.02562 * 17 16 15 30 30 H 1.07998 * 124.74036 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0571 2.4766 14 7 0.5351 -0.0862 3.1629 15 6 0.6123 0.8152 4.1686 16 6 -0.4022 1.0443 5.2250 17 6 -0.2528 1.9657 6.1992 18 16 -1.6816 1.9011 7.2278 19 6 -2.3375 0.6537 6.2609 20 7 -1.5386 0.3651 5.2937 21 7 1.7504 1.4470 4.0340 22 8 2.3525 1.0199 3.0716 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7089 1.1613 -3.4844 27 1 3.1263 -0.7994 1.2056 28 1 1.6055 -1.7198 1.2952 29 1 0.5924 2.6262 6.3255 30 1 -3.2911 0.1773 6.4346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235406428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:13 Heat of formation + Delta-G solvation = 108.929049 kcal Electronic energy + Delta-G solvation = -16985.728298 eV Core-core repulsion = 14104.439048 eV Total energy + Delta-G solvation = -2881.289250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.13633 -39.88609 -35.87260 -34.98009 -32.78602 -31.12274 -30.00954 -26.65387 -26.06444 -25.15099 -23.98556 -22.25669 -20.40406 -19.38463 -18.63432 -17.73679 -16.66368 -16.27826 -15.97605 -14.74279 -14.64691 -14.57868 -14.14910 -13.54650 -13.13927 -12.73830 -12.31966 -11.99204 -11.72780 -11.49474 -11.19914 -10.96750 -10.64668 -10.62231 -10.21577 -10.15880 -9.89795 -9.87239 -9.76661 -9.39092 -8.92838 -8.82291 -8.39652 -6.04436 -4.13033 0.30830 1.03744 1.36850 1.43947 2.18933 3.18331 3.25741 3.29497 3.36507 3.38827 3.46592 4.12376 4.40435 4.56038 5.04128 5.12457 5.27106 5.35076 5.61057 5.96729 6.06134 6.20388 6.38092 6.55467 6.94710 7.16662 7.26880 7.43004 7.65009 7.85891 8.07264 8.31170 8.49733 8.89363 9.52483 11.01669 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046585 B = 0.003849 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.903618 B = 7273.539378 C = 7543.847959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 H 0.032 0.968 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.027 4.027 13 C 0.219 3.781 14 N -0.463 5.463 15 C 0.227 3.773 16 C 0.148 3.852 17 C -0.219 4.219 18 S 0.138 5.862 19 C 0.027 3.973 20 N -0.436 5.436 21 N -0.384 5.384 22 O 0.077 5.923 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 1.568 17.865 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.066 4.066 13 C 0.000 4.000 14 N -0.195 5.195 15 C -0.046 4.046 16 C 0.016 3.984 17 C -0.362 4.362 18 S 0.390 5.610 19 C -0.273 4.273 20 N -0.148 5.148 21 N -0.093 5.093 22 O 0.017 5.983 23 H 0.101 0.899 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.204 0.796 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.405 2.220 18.864 19.499 hybrid contribution 0.823 -0.580 -1.652 1.935 sum -3.582 1.641 17.212 17.657 Atomic orbital electron populations 1.21828 0.97799 0.99613 1.00295 1.18743 0.93526 0.95946 0.88785 0.94993 1.21024 1.31867 1.12734 0.89961 0.92078 1.24953 0.94889 0.94900 0.99097 1.69902 1.36285 1.22717 1.23558 0.86533 0.79265 0.79346 0.82490 1.20633 1.21253 1.19766 1.20899 1.02421 0.97507 0.85773 1.29653 0.85414 0.88374 0.96572 1.72219 1.20126 1.22023 1.05153 1.22679 0.92510 0.93703 0.95680 1.16916 0.91449 0.95869 0.94174 1.27143 1.04209 1.05365 0.99456 1.83983 1.11077 1.35322 1.30586 1.28421 1.04213 1.00303 0.94366 1.66041 1.02194 1.25755 1.20845 1.74820 1.08202 1.20980 1.05290 1.85263 1.41650 1.41710 1.29696 0.89921 0.95069 0.97106 0.92854 0.88922 0.88109 0.79604 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.78 37.16 0.33 -3.07 16 2 C 0.05 1.19 2.29 -91.78 -0.21 0.98 16 3 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.52 -13.46 8.56 -34.44 -0.29 -13.76 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.22 4.30 6.95 -12.98 -0.09 4.21 16 14 N -0.46 -9.53 10.90 -9.86 -0.11 -9.63 16 15 C 0.23 4.30 8.01 -156.07 -1.25 3.05 16 16 C 0.15 2.38 6.72 -84.61 -0.57 1.81 16 17 C -0.22 -2.67 11.11 29.56 0.33 -2.34 16 18 S 0.14 1.18 23.21 -107.50 -2.49 -1.32 16 19 C 0.03 0.28 12.19 51.46 0.63 0.91 16 20 N -0.44 -6.71 10.55 -12.29 -0.13 -6.84 16 21 N -0.38 -7.13 12.09 30.99 0.37 -6.75 16 22 O 0.08 1.46 11.29 18.04 0.20 1.67 16 23 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.24 6.84 -51.93 -0.36 -0.11 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 28 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 29 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 283.04 15.07 4.27 4.27 Total: -1.00 -30.78 283.04 -6.40 -37.18 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -2.75 Total: -2.56 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.37 Total: -7.26 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.77 Total: -47.58 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.78 -6.40 -37.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.108 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds