Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.50695 * 109.47427 * 239.99808 * 2 1 3 5 5 H 1.07997 * 120.00519 * 240.00123 * 4 2 1 6 6 C 1.37888 * 119.99951 * 59.99760 * 4 2 1 7 7 N 1.31512 * 119.99548 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47475 * 90.00222 * 8 6 4 10 10 H 1.48507 * 109.46928 * 209.99931 * 8 6 4 11 11 H 1.48502 * 109.47239 * 329.99911 * 8 6 4 12 12 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 13 13 C 1.50706 * 109.47238 * 294.99946 * 12 2 1 14 14 N 1.30965 * 126.42090 * 90.00024 * 13 12 2 15 15 C 1.35270 * 105.57423 * 179.97438 * 14 13 12 16 16 C 1.48241 * 126.42101 * 180.02562 * 15 14 13 17 17 C 1.34925 * 122.97802 * 179.97438 * 16 15 14 18 18 S 1.76171 * 107.86221 * 179.97438 * 17 16 15 19 19 C 1.70910 * 90.44523 * 0.02562 * 18 17 16 20 20 N 1.28732 * 110.51631 * 359.76685 * 19 18 17 21 21 N 1.30864 * 107.15004 * 0.02562 * 15 14 13 22 22 O 1.21290 * 110.07883 * 359.74560 * 21 15 14 23 23 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 24 24 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 26 26 H 0.97002 * 119.99896 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46832 * 175.00260 * 12 2 1 28 28 H 1.09000 * 109.47611 * 55.00557 * 12 2 1 29 29 H 1.08002 * 126.06418 * 0.02562 * 17 16 15 30 30 H 1.07998 * 124.74036 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0571 2.4766 14 7 0.5351 -0.0862 3.1629 15 6 0.6123 0.8152 4.1686 16 6 -0.4022 1.0443 5.2250 17 6 -0.2528 1.9657 6.1992 18 16 -1.6816 1.9011 7.2278 19 6 -2.3375 0.6537 6.2609 20 7 -1.5386 0.3651 5.2937 21 7 1.7504 1.4470 4.0340 22 8 2.3525 1.0199 3.0716 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7089 1.1613 -3.4844 27 1 3.1263 -0.7994 1.2056 28 1 1.6055 -1.7198 1.2952 29 1 0.5924 2.6262 6.3255 30 1 -3.2911 0.1773 6.4346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235406428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = 87.793876 kcal Electronic energy + Delta-G solvation = -16986.644788 eV Core-core repulsion = 14104.439048 eV Total energy + Delta-G solvation = -2882.205740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.58584 -40.84363 -37.57849 -36.54328 -34.46410 -32.74669 -31.23709 -28.34702 -27.29149 -26.99888 -25.28665 -23.69288 -22.00935 -20.66569 -19.69713 -19.23198 -18.35624 -17.87239 -16.99662 -16.56904 -15.85205 -15.73027 -15.61992 -14.88032 -14.47428 -14.34432 -13.98430 -13.48321 -13.08823 -12.94050 -12.86668 -12.77894 -12.49288 -12.20148 -12.07362 -11.90485 -11.74299 -11.03247 -10.90507 -10.75608 -10.61624 -10.44553 -9.84419 -8.08037 -6.23014 -0.63556 0.08695 0.22706 0.53626 0.89586 1.48784 1.49588 1.59572 1.78929 1.98836 2.31789 2.47748 2.80637 3.22050 3.62640 3.95295 4.11714 4.25170 4.40354 4.47646 4.53432 4.75992 4.80891 4.93396 5.02942 5.15195 5.32871 5.61029 5.83676 6.03039 6.28476 6.54783 6.87806 7.03801 7.46394 8.98029 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046585 B = 0.003849 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.903618 B = 7273.539378 C = 7543.847959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 H 0.003 0.997 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.260 1.260 12 C -0.015 4.015 13 C 0.216 3.784 14 N -0.487 5.487 15 C 0.225 3.775 16 C 0.103 3.897 17 C -0.224 4.224 18 S 0.246 5.754 19 C 0.022 3.978 20 N -0.489 5.489 21 N -0.389 5.389 22 O 0.071 5.929 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.009 0.991 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.196 0.804 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 1.167 19.569 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.029 3.971 3 H 0.021 0.979 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.184 1.184 12 C -0.054 4.054 13 C -0.004 4.004 14 N -0.220 5.220 15 C -0.048 4.048 16 C -0.029 4.029 17 C -0.367 4.367 18 S 0.499 5.501 19 C -0.276 4.276 20 N -0.203 5.203 21 N -0.100 5.100 22 O 0.013 5.987 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.028 0.972 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.213 0.787 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.703 1.816 20.587 21.196 hybrid contribution 0.798 -0.359 -1.981 2.165 sum -3.906 1.456 18.607 19.068 Atomic orbital electron populations 1.21643 0.98526 0.99132 0.98770 1.18624 0.92871 0.94842 0.90792 0.97899 1.21443 1.31565 1.12965 0.90623 0.90788 1.25799 0.95141 0.95577 1.02281 1.70054 1.37690 1.24319 1.24033 0.85500 0.79156 0.78043 0.78619 1.20370 1.21544 1.18375 1.20696 1.03888 0.97122 0.83675 1.29568 0.85539 0.88554 0.96695 1.72198 1.20536 1.23156 1.06105 1.23303 0.93036 0.92643 0.95777 1.16978 0.92125 0.98568 0.95260 1.27491 1.06222 1.03850 0.99169 1.83639 1.07091 1.32326 1.27003 1.29054 1.04641 1.00564 0.93389 1.66006 1.02964 1.27716 1.23613 1.74775 1.08484 1.21290 1.05414 1.85235 1.41801 1.41658 1.29987 0.92727 0.94862 0.97183 0.93068 0.86449 0.87057 0.78702 0.74162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.23 8.78 71.98 0.63 -5.60 16 2 C 0.05 2.37 2.29 -11.54 -0.03 2.34 16 3 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 4 C -0.53 -27.36 8.56 25.60 0.22 -27.14 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 12 C -0.02 -0.58 5.26 29.85 0.16 -0.42 16 13 C 0.22 8.58 6.95 88.36 0.61 9.19 16 14 N -0.49 -20.40 10.90 -302.35 -3.29 -23.70 16 15 C 0.22 8.66 8.01 137.20 1.10 9.76 16 16 C 0.10 3.28 6.72 40.93 0.27 3.56 16 17 C -0.22 -5.09 11.11 67.06 0.75 -4.34 16 18 S 0.25 3.33 23.21 -56.49 -1.31 2.02 16 19 C 0.02 0.40 12.19 130.70 1.59 2.00 16 20 N -0.49 -14.72 10.55 -192.80 -2.03 -16.75 16 21 N -0.39 -14.65 12.09 -58.96 -0.71 -15.37 16 22 O 0.07 2.73 11.29 74.61 0.84 3.57 16 23 H 0.05 3.07 6.07 -2.39 -0.01 3.05 16 24 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.01 0.46 6.84 -2.39 -0.02 0.45 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.20 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.24 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -68.25 283.04 2.69 -65.56 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.17 Total: 2.91 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.76 Total: -9.64 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -5.80 Total: -108.61 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.84 Total: 3.57 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -68.25 2.69 -65.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.355 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds