Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46766 * 2 1 4 4 C 1.52992 * 109.47268 * 239.99961 * 2 1 3 5 5 C 1.50703 * 109.47445 * 65.00015 * 4 2 1 6 6 H 1.08001 * 119.99855 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00411 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99939 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47063 * 90.00170 * 9 7 5 11 11 H 1.48499 * 109.47209 * 210.00018 * 9 7 5 12 12 H 1.48495 * 109.47339 * 330.00098 * 9 7 5 13 13 C 1.50700 * 109.46990 * 119.99806 * 2 1 3 14 14 N 1.30934 * 126.40319 * 240.00235 * 13 2 1 15 15 C 1.35375 * 105.57778 * 180.02562 * 14 13 2 16 16 C 1.47785 * 126.45025 * 180.02562 * 15 14 13 17 17 C 1.35100 * 126.10911 * 180.02562 * 16 15 14 18 18 N 1.31342 * 114.24085 * 180.02562 * 17 16 15 19 19 C 1.29194 * 117.29290 * 0.02562 * 18 17 16 20 20 S 1.70952 * 110.35856 * 359.72232 * 19 18 17 21 21 N 1.31014 * 107.10763 * 0.02562 * 15 14 13 22 22 O 1.21291 * 110.04932 * 359.97438 * 21 15 14 23 23 H 1.08995 * 109.47127 * 60.00570 * 1 2 3 24 24 H 1.09012 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47651 * 300.00080 * 1 2 3 26 26 H 1.09004 * 109.47378 * 184.99817 * 4 2 1 27 27 H 1.08999 * 109.47568 * 304.99928 * 4 2 1 28 28 H 0.96996 * 120.00219 * 180.02562 * 8 7 5 29 29 H 1.07997 * 122.87704 * 359.97438 * 17 16 15 30 30 H 1.08000 * 124.82327 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3758 7 6 1.9924 -0.4022 -3.7283 8 7 2.6756 -1.5193 -3.8511 9 14 1.4977 0.5621 -5.2497 10 1 2.5629 1.5416 -5.5830 11 1 1.3103 -0.3721 -6.3887 12 1 0.2266 1.2834 -4.9869 13 6 2.0323 -0.7104 1.2305 14 7 2.7881 -0.1984 2.1692 15 6 2.9834 -1.1961 3.0631 16 6 3.7742 -1.1163 4.3090 17 6 3.9650 -2.1170 5.1964 18 7 4.7105 -1.7892 6.2268 19 6 5.1619 -0.5794 6.2704 20 16 4.6413 0.2994 4.8996 21 7 2.3395 -2.2458 2.6159 22 8 1.7904 -1.9812 1.5673 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.1264 -0.7994 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9229 -1.8423 -4.7317 29 1 3.5403 -3.1018 5.0697 30 1 5.7842 -0.1814 7.0583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235416954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 100.818328 kcal Electronic energy + Delta-G solvation = -16808.744849 eV Core-core repulsion = 13927.103891 eV Total energy + Delta-G solvation = -2881.640957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.24409 -39.82311 -36.05583 -35.44313 -32.78438 -31.55223 -29.89601 -27.19400 -26.25006 -24.72966 -23.59422 -22.85450 -20.90989 -19.53412 -18.48625 -17.77422 -16.84207 -16.46828 -15.95874 -14.70350 -14.61996 -14.53455 -14.18478 -14.06555 -13.41099 -12.70270 -12.38495 -12.03961 -11.86783 -11.74184 -11.45081 -11.04865 -10.98998 -10.78343 -10.66403 -10.39000 -10.16603 -9.96726 -9.57728 -9.36744 -9.30392 -8.90458 -8.48484 -6.12390 -4.16824 0.10236 0.96482 1.47572 1.52314 2.28687 2.87702 3.17360 3.26587 3.33726 3.35426 3.53947 4.11029 4.23650 4.38199 4.94476 5.09415 5.24147 5.30681 5.63469 5.74123 5.79179 5.84428 6.11485 6.15398 6.48066 6.59185 6.76838 7.37185 7.42200 7.49872 7.82430 8.17829 8.35487 8.87389 9.48049 10.98868 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.040277 B = 0.003876 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.015440 B = 7222.365302 C = 7332.528214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 H 0.108 0.892 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.231 3.769 14 N -0.494 5.494 15 C 0.229 3.771 16 C -0.157 4.157 17 C 0.075 3.925 18 N -0.470 5.470 19 C 0.005 3.995 20 S 0.214 5.786 21 N -0.376 5.376 22 O 0.087 5.913 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.184 0.816 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 3.491 16.067 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.126 0.874 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.012 3.988 14 N -0.227 5.227 15 C -0.042 4.042 16 C -0.281 4.281 17 C -0.082 4.082 18 N -0.183 5.183 19 C -0.291 4.291 20 S 0.467 5.533 21 N -0.084 5.084 22 O 0.027 5.973 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.201 0.799 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.170 3.613 16.684 17.209 hybrid contribution -0.467 -0.442 -1.092 1.267 sum 1.703 3.171 15.592 16.002 Atomic orbital electron populations 1.21795 0.92795 1.02687 1.02107 1.20442 0.96715 0.98937 0.86198 0.87387 1.19262 0.96910 0.96142 0.88663 1.21037 1.36047 1.08710 0.90264 0.91894 1.25002 0.94932 0.94997 0.99250 1.69964 1.38132 1.20916 1.23892 0.86533 0.79001 0.79708 0.82424 1.20599 1.21196 1.19680 1.29588 0.90821 0.81382 0.97023 1.72121 1.18664 1.28634 1.03325 1.22360 0.99569 0.86732 0.95552 1.22836 1.08005 0.99142 0.98068 1.22100 0.97136 1.00496 0.88501 1.66310 1.11493 1.16728 1.23792 1.28705 1.04241 0.93208 1.02933 1.84227 1.41240 1.12610 1.15211 1.74969 1.12686 1.22360 0.98434 1.85286 1.53819 1.30030 1.28182 0.89475 0.92195 0.93999 0.95940 0.95142 0.92730 0.79944 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.99 37.16 0.33 -1.89 16 2 C 0.00 -0.05 2.81 -91.78 -0.26 -0.30 16 3 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 4 C 0.03 0.67 4.43 -27.89 -0.12 0.54 16 5 C -0.52 -13.36 8.41 -34.44 -0.29 -13.65 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.23 4.35 7.00 -12.98 -0.09 4.25 16 14 N -0.49 -9.19 11.58 -9.88 -0.11 -9.31 16 15 C 0.23 4.03 8.05 -156.05 -1.26 2.77 16 16 C -0.16 -2.30 6.52 -36.80 -0.24 -2.54 16 17 C 0.08 1.00 11.28 -18.88 -0.21 0.79 16 18 N -0.47 -5.80 10.52 -15.48 -0.16 -5.96 16 19 C 0.00 0.05 12.22 51.65 0.63 0.68 16 20 S 0.21 2.36 23.21 -107.50 -2.50 -0.14 16 21 N -0.38 -6.91 12.18 30.98 0.38 -6.53 16 22 O 0.09 1.65 11.29 18.01 0.20 1.86 16 23 H 0.09 1.46 6.95 -51.93 -0.36 1.09 16 24 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.18 2.26 8.06 -52.49 -0.42 1.83 16 30 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 287.24 15.07 4.33 4.33 Total: -1.00 -29.75 287.24 -6.58 -36.33 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -2.83 Total: -3.38 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.60 Total: -7.82 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.84 Total: -46.55 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.20 Total: 1.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.50 Total: -0.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.75 -6.58 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235416954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.148 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds