Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47617 * 2 1 4 4 C 1.53000 * 109.47340 * 239.99852 * 2 1 3 5 5 C 1.50695 * 109.47191 * 65.00090 * 4 2 1 6 6 H 1.08002 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00662 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00832 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99351 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46855 * 90.00701 * 9 7 5 11 11 H 1.48502 * 109.46814 * 210.00082 * 9 7 5 12 12 H 1.48496 * 109.47272 * 330.00573 * 9 7 5 13 13 C 1.50703 * 109.47266 * 119.99798 * 2 1 3 14 14 N 1.30965 * 126.42883 * 240.34945 * 13 2 1 15 15 C 1.35274 * 105.57981 * 180.14102 * 14 13 2 16 16 C 1.48234 * 126.42528 * 179.84533 * 15 14 13 17 17 C 1.34924 * 122.97912 * 179.71028 * 16 15 14 18 18 S 1.76173 * 107.86270 * 179.73416 * 17 16 15 19 19 C 1.70908 * 90.44587 * 359.97438 * 18 17 16 20 20 N 1.28735 * 110.51903 * 0.02562 * 19 18 17 21 21 N 1.30869 * 107.14606 * 359.58130 * 15 14 13 22 22 O 1.21293 * 110.07965 * 0.26412 * 21 15 14 23 23 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47320 * 300.00109 * 1 2 3 25 25 H 1.09003 * 109.47375 * 60.00152 * 1 2 3 26 26 H 1.09002 * 109.47446 * 184.99961 * 4 2 1 27 27 H 1.09006 * 109.46761 * 305.00086 * 4 2 1 28 28 H 0.96998 * 120.00730 * 179.97438 * 8 7 5 29 29 H 1.08001 * 126.06362 * 359.75111 * 17 16 15 30 30 H 1.08000 * 124.74187 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0236 -3.1333 -4.0190 11 1 3.8109 -1.9191 -5.1197 12 1 3.8251 -2.1756 -2.7083 13 6 2.0323 -0.7104 1.2305 14 7 2.7831 -0.1970 2.1728 15 6 2.9825 -1.1958 3.0630 16 6 3.7757 -1.1157 4.3127 17 6 3.9246 -2.1582 5.1563 18 16 4.9401 -1.6292 6.4951 19 6 5.0678 -0.0728 5.8009 20 7 4.4067 -0.0151 4.6977 21 7 2.3392 -2.2445 2.6168 22 8 1.7902 -1.9810 1.5678 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7199 -1.2951 28 1 1.8922 -0.0457 -5.6800 29 1 3.4972 -3.1423 5.0324 30 1 5.6245 0.7481 6.2283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235417049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = 108.193437 kcal Electronic energy + Delta-G solvation = -16913.808913 eV Core-core repulsion = 14032.487765 eV Total energy + Delta-G solvation = -2881.321149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.28942 -39.98348 -36.08480 -35.27012 -32.69461 -31.64005 -30.06631 -27.74206 -26.27254 -24.56721 -24.09244 -22.42849 -20.85651 -19.40977 -18.58202 -17.81647 -17.16740 -16.54455 -16.07232 -14.83346 -14.75693 -14.67870 -14.11878 -13.66658 -13.60442 -12.88555 -12.33089 -12.19942 -12.12585 -11.71204 -11.51162 -11.22272 -10.98338 -10.78053 -10.47285 -10.22173 -9.98551 -9.90312 -9.86338 -9.69901 -9.30681 -8.95595 -8.61787 -6.12270 -4.12333 0.21352 0.94777 1.28135 1.30326 2.03876 3.05293 3.11544 3.27742 3.33440 3.35850 3.39509 3.95850 4.39053 4.45143 4.94787 4.99375 5.19602 5.20922 5.47302 5.62134 5.70677 5.81986 6.13342 6.14567 6.44024 6.50055 6.80428 7.00650 7.14456 7.32855 7.62386 8.33998 8.40162 8.89755 9.48519 11.00119 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.004065 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.936761 B = 6886.207761 C = 7075.442983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 H 0.114 0.886 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.217 3.783 14 N -0.469 5.469 15 C 0.228 3.772 16 C 0.146 3.854 17 C -0.218 4.218 18 S 0.143 5.857 19 C 0.027 3.973 20 N -0.437 5.437 21 N -0.381 5.381 22 O 0.084 5.916 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.187 0.813 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -4.240 21.550 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 H 0.132 0.868 4 C -0.047 4.047 5 C -0.558 4.558 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.002 4.002 14 N -0.201 5.201 15 C -0.045 4.045 16 C 0.014 3.986 17 C -0.361 4.361 18 S 0.395 5.605 19 C -0.273 4.273 20 N -0.150 5.150 21 N -0.089 5.089 22 O 0.023 5.977 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.110 0.890 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.204 0.796 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.123 -4.596 22.589 23.615 hybrid contribution 0.108 -0.818 -1.111 1.384 sum 5.231 -5.414 21.479 22.760 Atomic orbital electron populations 1.21811 0.92437 1.02663 1.02606 1.20187 0.96936 0.98966 0.85083 0.86783 1.19733 0.96734 0.96410 0.91783 1.20912 1.36528 1.09923 0.88479 0.90139 1.24929 0.95282 0.96872 0.95812 1.69879 1.46417 1.39082 0.98126 0.86870 0.80799 0.84325 0.77920 1.19982 1.21202 1.19126 1.29734 0.91611 0.81301 0.97595 1.72199 1.17099 1.28226 1.02542 1.22674 0.99512 0.86385 0.95929 1.16894 0.99785 0.88939 0.93013 1.27160 1.06050 1.04738 0.98156 1.84018 1.44254 1.08542 1.23669 1.28428 1.02780 1.01419 0.94680 1.66045 1.08138 1.27277 1.13524 1.74859 1.12777 1.22616 0.98671 1.85268 1.53912 1.30389 1.28102 0.92305 0.93752 0.89015 0.95949 0.95708 0.92510 0.79556 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.98 37.15 0.33 -1.97 16 2 C 0.01 0.17 2.81 -91.77 -0.26 -0.09 16 3 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 4 C -0.01 -0.19 3.50 -27.89 -0.10 -0.29 16 5 C -0.52 -13.77 8.96 -34.44 -0.31 -14.07 16 6 H 0.08 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.52 13.96 55.43 0.77 -25.74 16 9 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.22 4.12 7.00 -12.98 -0.09 4.03 16 14 N -0.47 -9.23 11.58 -9.85 -0.11 -9.34 16 15 C 0.23 4.13 8.01 -156.06 -1.25 2.88 16 16 C 0.15 2.22 6.72 -84.61 -0.57 1.65 16 17 C -0.22 -2.49 11.11 29.56 0.33 -2.16 16 18 S 0.14 1.12 23.21 -107.50 -2.49 -1.38 16 19 C 0.03 0.26 12.19 51.46 0.63 0.88 16 20 N -0.44 -6.33 10.55 -12.29 -0.13 -6.46 16 21 N -0.38 -6.83 12.09 31.00 0.37 -6.46 16 22 O 0.08 1.55 11.29 18.02 0.20 1.76 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 26 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 27 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -31.58 283.52 -5.96 -37.54 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -2.79 Total: -3.44 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.38 Total: -7.20 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.90 Total: -48.00 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.58 -5.96 -37.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235417049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.733 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds