Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47617 * 2 1 4 4 C 1.53000 * 109.47340 * 239.99852 * 2 1 3 5 5 C 1.50695 * 109.47191 * 65.00090 * 4 2 1 6 6 H 1.08002 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00662 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00832 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99351 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46855 * 90.00701 * 9 7 5 11 11 H 1.48502 * 109.46814 * 210.00082 * 9 7 5 12 12 H 1.48496 * 109.47272 * 330.00573 * 9 7 5 13 13 C 1.50703 * 109.47266 * 119.99798 * 2 1 3 14 14 N 1.30965 * 126.42883 * 240.34945 * 13 2 1 15 15 C 1.35274 * 105.57981 * 180.14102 * 14 13 2 16 16 C 1.48234 * 126.42528 * 179.84533 * 15 14 13 17 17 C 1.34924 * 122.97912 * 179.71028 * 16 15 14 18 18 S 1.76173 * 107.86270 * 179.73416 * 17 16 15 19 19 C 1.70908 * 90.44587 * 359.97438 * 18 17 16 20 20 N 1.28735 * 110.51903 * 0.02562 * 19 18 17 21 21 N 1.30869 * 107.14606 * 359.58130 * 15 14 13 22 22 O 1.21293 * 110.07965 * 0.26412 * 21 15 14 23 23 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47320 * 300.00109 * 1 2 3 25 25 H 1.09003 * 109.47375 * 60.00152 * 1 2 3 26 26 H 1.09002 * 109.47446 * 184.99961 * 4 2 1 27 27 H 1.09006 * 109.46761 * 305.00086 * 4 2 1 28 28 H 0.96998 * 120.00730 * 179.97438 * 8 7 5 29 29 H 1.08001 * 126.06362 * 359.75111 * 17 16 15 30 30 H 1.08000 * 124.74187 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 1.6450 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0236 -3.1333 -4.0190 11 1 3.8109 -1.9191 -5.1197 12 1 3.8251 -2.1756 -2.7083 13 6 2.0323 -0.7104 1.2305 14 7 2.7831 -0.1970 2.1728 15 6 2.9825 -1.1958 3.0630 16 6 3.7757 -1.1157 4.3127 17 6 3.9246 -2.1582 5.1563 18 16 4.9401 -1.6292 6.4951 19 6 5.0678 -0.0728 5.8009 20 7 4.4067 -0.0151 4.6977 21 7 2.3392 -2.2445 2.6168 22 8 1.7902 -1.9810 1.5678 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7199 -1.2951 28 1 1.8922 -0.0457 -5.6800 29 1 3.4972 -3.1423 5.0324 30 1 5.6245 0.7481 6.2283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235417049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = 85.511501 kcal Electronic energy + Delta-G solvation = -16914.792476 eV Core-core repulsion = 14032.487765 eV Total energy + Delta-G solvation = -2882.304711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.67368 -40.86615 -37.66901 -36.69255 -34.58371 -33.08022 -31.17643 -29.53659 -27.22020 -26.11364 -25.33154 -24.00482 -22.24904 -20.52239 -19.62050 -19.24269 -19.08339 -17.90735 -17.02221 -16.49848 -15.96945 -15.74910 -15.66087 -15.23580 -14.72104 -14.36467 -13.96908 -13.72125 -13.22405 -13.05248 -12.96241 -12.88040 -12.64816 -12.27604 -12.04979 -11.88013 -11.79735 -11.37804 -11.17086 -10.77750 -10.74542 -10.63653 -9.87614 -8.26398 -6.29798 -0.66383 0.01314 0.20891 0.52345 0.81772 1.36777 1.39531 1.48612 1.68000 1.94535 2.25359 2.36830 2.66287 3.08831 3.59721 3.80972 4.03488 4.13851 4.17628 4.23339 4.37411 4.61970 4.70609 4.82235 4.93680 5.01294 5.17544 5.30539 5.45134 5.60449 6.27044 6.51986 6.76605 6.95302 7.33908 8.88984 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.004065 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.936761 B = 6886.207761 C = 7075.442983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.016 3.984 3 H 0.110 0.890 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.933 3.067 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.259 1.259 13 C 0.217 3.783 14 N -0.491 5.491 15 C 0.228 3.772 16 C 0.102 3.898 17 C -0.223 4.223 18 S 0.247 5.753 19 C 0.023 3.977 20 N -0.489 5.489 21 N -0.385 5.385 22 O 0.077 5.923 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.267 0.733 29 H 0.196 0.804 30 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 -5.638 24.345 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.004 4.004 3 H 0.128 0.872 4 C -0.042 4.042 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.757 3.243 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.183 1.183 13 C -0.003 4.003 14 N -0.224 5.224 15 C -0.045 4.045 16 C -0.031 4.031 17 C -0.366 4.366 18 S 0.501 5.499 19 C -0.276 4.276 20 N -0.203 5.203 21 N -0.095 5.095 22 O 0.019 5.981 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.213 0.787 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.286 -6.005 25.405 26.851 hybrid contribution -0.185 -0.353 -1.759 1.803 sum 6.102 -6.358 23.646 25.235 Atomic orbital electron populations 1.21754 0.90673 1.03415 1.03039 1.19974 0.98354 0.98222 0.83865 0.87228 1.19611 0.96201 0.96599 0.91830 1.21177 1.35187 1.09222 0.89943 0.92538 1.25733 0.96557 1.00180 0.95637 1.70007 1.48408 1.41147 0.98732 0.85922 0.79673 0.80711 0.77981 1.18697 1.21085 1.18338 1.29486 0.91762 0.81590 0.97498 1.72185 1.17527 1.29335 1.03310 1.23288 0.99017 0.85597 0.96600 1.16948 1.02041 0.90779 0.93283 1.27503 1.05738 1.04399 0.98988 1.83700 1.40797 1.05591 1.19833 1.29058 1.01337 1.03699 0.93486 1.66012 1.10154 1.28062 1.16067 1.74818 1.13420 1.22645 0.98641 1.85244 1.54278 1.30037 1.28536 0.91399 0.91460 0.90380 0.96812 0.94828 0.92424 0.78655 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.98 71.98 0.65 -3.69 16 2 C 0.02 0.62 2.81 -11.54 -0.03 0.59 16 3 H 0.11 4.26 8.14 -2.39 -0.02 4.24 16 4 C 0.00 -0.19 3.50 29.85 0.10 -0.08 16 5 C -0.52 -27.81 8.96 25.60 0.23 -27.58 16 6 H 0.06 3.24 7.30 -2.91 -0.02 3.22 16 7 C 0.02 0.95 5.47 84.66 0.46 1.41 16 8 N -0.94 -56.91 13.96 21.45 0.30 -56.61 16 9 Si 0.93 43.44 27.47 68.60 1.88 45.33 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 13 C 0.22 8.18 7.00 88.36 0.62 8.80 16 14 N -0.49 -19.41 11.58 -302.31 -3.50 -22.91 16 15 C 0.23 8.21 8.01 137.19 1.10 9.31 16 16 C 0.10 3.01 6.72 40.93 0.27 3.28 16 17 C -0.22 -4.60 11.11 67.06 0.75 -3.86 16 18 S 0.25 2.90 23.21 -56.49 -1.31 1.59 16 19 C 0.02 0.37 12.19 130.70 1.59 1.96 16 20 N -0.49 -13.56 10.55 -192.80 -2.03 -15.60 16 21 N -0.39 -13.66 12.09 -58.92 -0.71 -14.37 16 22 O 0.08 2.82 11.29 74.53 0.84 3.66 16 23 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.08 2.80 6.95 -2.39 -0.02 2.78 16 26 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 27 H 0.03 1.46 7.57 -2.38 -0.02 1.44 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.24 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -69.68 283.52 2.33 -67.36 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.12 Total: 1.41 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.74 Total: -9.85 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.95 Total: -109.49 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.84 Total: 3.66 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -69.68 2.33 -67.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235417049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.868 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds