Wall clock time and date at job start Mon Mar 30 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48493 * 109.47238 * 269.99480 * 3 2 1 5 5 H 1.48498 * 109.47115 * 30.00132 * 3 2 1 6 6 H 1.48506 * 109.46916 * 149.99713 * 3 2 1 7 7 C 1.37875 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00476 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99566 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00030 * 270.00389 * 10 9 7 12 12 O 1.21283 * 120.00236 * 4.45205 * 11 10 9 13 13 C 1.50707 * 119.99667 * 184.45100 * 11 10 9 14 14 C 1.52994 * 109.46774 * 174.45902 * 13 11 10 15 15 S 1.81403 * 109.46930 * 180.02562 * 14 13 11 16 16 C 1.39923 * 119.99818 * 89.99570 * 10 9 7 17 17 C 1.38872 * 120.07336 * 246.80191 * 16 10 9 18 18 C 1.38113 * 119.92646 * 179.97438 * 17 16 10 19 19 C 1.38284 * 120.07236 * 359.97313 * 18 17 16 20 20 C 1.38277 * 120.14310 * 0.04475 * 19 18 17 21 21 C 1.38117 * 120.06854 * 359.96101 * 20 19 18 22 22 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47188 * 60.00210 * 9 7 2 24 24 H 1.08996 * 109.46900 * 299.99790 * 9 7 2 25 25 H 1.08998 * 109.47306 * 294.45964 * 13 11 10 26 26 H 1.08998 * 109.46760 * 54.46246 * 13 11 10 27 27 H 1.09004 * 109.47662 * 300.00192 * 14 13 11 28 28 H 1.09001 * 109.47659 * 60.00410 * 14 13 11 29 29 H 1.34505 * 103.00194 * 180.02562 * 15 14 13 30 30 H 1.07996 * 120.03472 * 359.70196 * 17 16 10 31 31 H 1.07998 * 119.96255 * 179.97438 * 18 17 16 32 32 H 1.08010 * 119.92736 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.96673 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.03237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2239 -3.2099 1.1699 12 8 3.9454 -2.6673 2.2182 13 6 4.8206 -4.5938 1.1730 14 6 5.0978 -5.0264 2.6141 15 16 5.8168 -6.6919 2.6177 16 6 4.2334 -3.2358 -1.2090 17 6 3.4447 -4.3188 -1.5745 18 6 3.6776 -4.9681 -2.7710 19 6 4.6944 -4.5405 -3.6050 20 6 5.4818 -3.4627 -3.2438 21 6 5.2541 -2.8091 -2.0485 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6805 -0.8888 25 1 4.1218 -5.2919 0.7121 26 1 5.7536 -4.5884 0.6094 27 1 5.7967 -4.3284 3.0750 28 1 4.1649 -5.0319 3.1777 29 1 6.0044 -6.9376 3.9268 30 1 2.6530 -4.6556 -0.9218 31 1 3.0649 -5.8107 -3.0557 32 1 4.8742 -5.0498 -4.5404 33 1 6.2754 -3.1314 -3.8971 34 1 5.8696 -1.9676 -1.7668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236565693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:00 Heat of formation + Delta-G solvation = -23.703412 kcal Electronic energy + Delta-G solvation = -17801.439745 eV Core-core repulsion = 15017.939463 eV Total energy + Delta-G solvation = -2783.500282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.46891 -39.51879 -36.61715 -34.81568 -33.95599 -31.77955 -31.14105 -29.55444 -26.28212 -24.15882 -23.50406 -23.15429 -20.44821 -19.14277 -18.64081 -18.29398 -17.38672 -17.08800 -16.92049 -16.14337 -15.79329 -15.69717 -14.96375 -14.65996 -14.53365 -14.23957 -13.91948 -13.81021 -13.57556 -13.32653 -13.15741 -12.58634 -12.53446 -12.31807 -12.13112 -11.94018 -11.76404 -11.44014 -11.02495 -10.84148 -10.11228 -9.77854 -9.19499 -9.09262 -8.35597 -6.41041 0.39086 0.50602 0.55394 1.30390 1.34388 1.44461 1.61346 1.72020 2.18276 2.29222 2.90907 2.98864 3.59281 3.72411 3.85032 4.11273 4.17172 4.37006 4.42915 4.58549 4.64446 4.64643 4.74756 4.80535 4.85430 4.88873 5.19712 5.38885 5.41485 5.58341 5.68020 5.75596 6.09397 6.19755 6.58941 6.61814 7.15183 7.27611 8.81443 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.007026 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.958474 B = 3984.475303 C = 5206.578346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.228 3.772 10 N -0.559 5.559 11 C 0.512 3.488 12 O -0.576 6.576 13 C -0.106 4.106 14 C -0.047 4.047 15 S -0.241 6.241 16 C 0.122 3.878 17 C -0.137 4.137 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.135 4.135 22 H 0.269 0.731 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.987 -11.155 -5.752 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.573 4.573 8 H 0.046 0.954 9 C 0.107 3.893 10 N -0.285 5.285 11 C 0.301 3.699 12 O -0.456 6.456 13 C -0.147 4.147 14 C -0.196 4.196 15 S -0.089 6.089 16 C 0.032 3.968 17 C -0.156 4.156 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.155 4.155 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.016 -11.532 -5.381 19.683 hybrid contribution -0.940 1.716 1.564 2.505 sum 14.076 -9.816 -3.816 17.580 Atomic orbital electron populations 1.70044 1.08192 1.28358 1.51786 1.25829 0.95687 1.03269 0.93782 0.85744 0.79354 0.78277 0.79852 1.17672 1.20520 1.17597 1.21456 0.91283 0.93304 1.51284 0.95398 1.19437 0.93121 0.79349 0.97396 1.45523 1.63552 1.14798 1.04644 1.21128 0.77700 0.88464 0.82641 1.90657 1.53534 1.69050 1.32322 1.21309 1.04121 0.92160 0.97106 1.22727 1.03674 0.93652 0.99578 1.87222 1.84239 1.23040 1.14428 1.17957 0.96460 0.94847 0.87555 1.21377 0.98298 0.97343 0.98631 1.21315 0.98344 1.00037 0.92709 1.21562 0.94899 0.96821 1.00379 1.21365 1.00188 0.95366 0.95139 1.21418 0.96879 1.01343 0.95834 0.92218 0.95295 0.93615 0.86947 0.86126 0.89178 0.90048 0.93553 0.87631 0.83476 0.82469 0.82610 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.08 13.96 21.45 0.30 -59.78 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 4 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.53 -31.92 9.94 25.60 0.25 -31.67 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 9 C 0.23 11.27 4.14 85.63 0.35 11.62 16 10 N -0.56 -23.41 2.51 -635.28 -1.59 -25.00 16 11 C 0.51 20.73 7.53 87.66 0.66 21.39 16 12 O -0.58 -28.18 15.61 -3.04 -0.05 -28.22 16 13 C -0.11 -3.04 4.37 29.85 0.13 -2.91 16 14 C -0.05 -1.24 5.61 71.98 0.40 -0.83 16 15 S -0.24 -5.31 25.88 -56.49 -1.46 -6.77 16 16 C 0.12 4.18 4.42 38.15 0.17 4.35 16 17 C -0.14 -4.28 8.46 22.39 0.19 -4.09 16 18 C -0.11 -2.45 10.04 22.25 0.22 -2.22 16 19 C -0.12 -2.26 10.04 22.29 0.22 -2.04 16 20 C -0.10 -2.10 10.04 22.25 0.22 -1.88 16 21 C -0.14 -3.74 9.64 22.39 0.22 -3.53 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.03 1.51 6.54 -2.39 -0.02 1.50 16 24 H 0.05 2.09 7.26 -2.39 -0.02 2.07 16 25 H 0.11 3.04 6.99 -2.39 -0.02 3.02 16 26 H 0.12 2.94 8.02 -2.39 -0.02 2.93 16 27 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 29 H 0.10 1.98 9.07 73.35 0.67 2.65 16 30 H 0.11 3.59 7.90 -2.91 -0.02 3.57 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -74.26 306.45 4.30 -69.96 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.71 Total: 14.16 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 3.51 Total: -10.61 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.30 Total: -84.79 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.46 Total: -6.77 kcal Total: -74.26 4.30 -69.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236565693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.253 kcal (2) G-P(sol) polarization free energy of solvation -74.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds