Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48498 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46927 * 299.99452 * 3 2 1 6 6 H 1.48496 * 109.47190 * 60.00002 * 3 2 1 7 7 C 1.40127 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.46149 * 120.00415 * 0.02562 * 7 2 1 10 10 O 1.21749 * 119.99485 * 351.78284 * 9 7 2 11 11 N 1.34777 * 120.00141 * 171.78292 * 9 7 2 12 12 C 1.46913 * 120.53419 * 353.76907 * 11 9 7 13 13 C 1.53434 * 107.80740 * 224.68673 * 12 11 9 14 14 C 1.52857 * 108.84652 * 296.79073 * 13 12 11 15 15 C 1.50591 * 110.47766 * 51.29580 * 14 13 12 16 16 C 1.38447 * 118.93426 * 159.54351 * 15 14 13 17 17 C 1.38281 * 120.30173 * 179.77485 * 16 15 14 18 18 Cl 1.73606 * 119.92180 * 179.97438 * 17 16 15 19 19 C 1.38472 * 120.15423 * 0.22414 * 17 16 15 20 20 C 1.37965 * 119.90692 * 359.54647 * 19 17 16 21 21 C 1.38732 * 121.49434 * 339.39790 * 15 14 13 22 22 H 0.97000 * 119.99358 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.79018 * 105.11566 * 12 11 9 24 24 H 1.08996 * 109.84373 * 344.29589 * 12 11 9 25 25 H 1.09003 * 109.57490 * 176.97369 * 13 12 11 26 26 H 1.09002 * 109.67464 * 56.66157 * 13 12 11 27 27 H 1.09008 * 109.29908 * 290.98634 * 14 13 12 28 28 H 1.09000 * 109.30246 * 171.61274 * 14 13 12 29 29 H 1.08004 * 119.84559 * 359.80335 * 16 15 14 30 30 H 1.07994 * 120.04560 * 179.80018 * 19 17 16 31 31 H 1.07998 * 119.98603 * 180.26578 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8817 2.3963 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0069 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2762 -2.4793 0.0005 10 8 0.0680 -2.4846 0.1508 11 7 1.9397 -3.6405 -0.1658 12 6 3.3741 -3.6417 -0.4834 13 6 3.6057 -4.6638 -1.6041 14 6 3.2377 -6.0546 -1.0876 15 6 1.8629 -6.0419 -0.4734 16 6 1.1776 -7.2375 -0.3401 17 6 -0.0846 -7.2590 0.2242 18 17 -0.9353 -8.7637 0.3859 19 6 -0.6738 -6.0826 0.6558 20 6 0.0043 -4.8876 0.5310 21 6 1.2743 -4.8633 -0.0384 22 1 -0.4849 0.8401 -0.0004 23 1 3.9473 -3.9255 0.3992 24 1 3.6796 -2.6506 -0.8188 25 1 4.6546 -4.6497 -1.9001 26 1 2.9808 -4.4157 -2.4620 27 1 3.9650 -6.3642 -0.3369 28 1 3.2559 -6.7630 -1.9159 29 1 1.6313 -8.1575 -0.6780 30 1 -1.6610 -6.1011 1.0933 31 1 -0.4523 -3.9699 0.8712 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247710112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = -17.723677 kcal Electronic energy + Delta-G solvation = -17692.112242 eV Core-core repulsion = 14770.994460 eV Total energy + Delta-G solvation = -2921.117782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03905 -37.34894 -36.14933 -35.26260 -33.09814 -32.35072 -29.91991 -29.46416 -26.52086 -24.93726 -22.68770 -22.50701 -20.41709 -19.04915 -16.92346 -16.24161 -16.10652 -15.65429 -14.81133 -14.46400 -14.00066 -13.77950 -13.44648 -12.97314 -12.86980 -12.71013 -12.36034 -12.14774 -11.43344 -11.41275 -11.26417 -11.04780 -10.95275 -10.70868 -10.58713 -10.45089 -10.39367 -10.10709 -9.23225 -8.93283 -8.31832 -7.67042 -6.90224 -6.45631 -4.94026 1.79775 1.88412 2.62228 2.99146 3.07880 3.11928 3.84202 4.07671 4.15752 4.39958 5.02004 5.17604 5.23213 5.36491 5.54214 5.62292 5.69974 5.77484 5.99571 6.03940 6.15837 6.23489 6.28847 6.50156 6.52894 6.64376 6.87027 6.99368 7.17904 7.28341 7.49426 7.96349 8.11730 8.73491 8.97845 10.20457 10.42568 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.005629 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.755639 B = 4973.207540 C = 5805.392660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.546 3.454 10 O -0.551 6.551 11 N -0.569 5.569 12 C 0.111 3.889 13 C -0.137 4.137 14 C -0.067 4.067 15 C -0.145 4.145 16 C -0.088 4.088 17 C -0.084 4.084 18 Cl -0.101 7.101 19 C -0.092 4.092 20 C -0.152 4.152 21 C 0.204 3.796 22 H 0.274 0.726 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -8.920 -1.267 10.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.355 3.645 10 O -0.434 6.434 11 N -0.290 5.290 12 C -0.012 4.012 13 C -0.175 4.175 14 C -0.104 4.104 15 C -0.149 4.149 16 C -0.107 4.107 17 C -0.112 4.112 18 Cl -0.073 7.073 19 C -0.111 4.111 20 C -0.172 4.172 21 C 0.104 3.896 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.956 -8.773 -1.185 10.146 hybrid contribution 0.382 0.465 -0.064 0.606 sum 5.338 -8.308 -1.249 9.954 Atomic orbital electron populations 1.69966 1.07228 1.28030 1.33230 1.25780 0.94736 1.00645 0.92389 0.86210 0.80467 0.81092 0.78515 1.18521 1.19912 1.19864 1.20972 0.93937 0.88677 1.53329 0.90345 1.18448 0.86893 0.81817 0.77311 1.90396 1.14442 1.84678 1.53868 1.46278 1.09354 1.04296 1.69085 1.21763 0.81695 1.00930 0.96802 1.21889 1.01578 0.94957 0.99065 1.20272 0.93014 0.97624 0.99522 1.19309 0.98140 0.91774 1.05657 1.20502 0.92965 0.97282 0.99936 1.20642 0.94902 0.86151 1.09471 1.98298 1.78001 1.33943 1.97062 1.20983 0.99930 0.90605 0.99627 1.22598 0.94516 1.00092 1.00010 1.18049 0.92495 0.85905 0.93152 0.91550 0.92473 0.88117 0.90682 0.91217 0.91222 0.91114 0.86012 0.85784 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.06 11.86 55.55 0.66 -20.40 16 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 16 3 Si 0.91 18.61 29.56 -169.99 -5.02 13.58 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.53 -13.83 8.64 -35.70 -0.31 -14.14 16 8 H 0.08 1.83 6.11 -52.48 -0.32 1.51 16 9 C 0.55 14.58 7.46 -13.09 -0.10 14.48 16 10 O -0.55 -16.36 11.73 5.15 0.06 -16.30 16 11 N -0.57 -12.69 2.96 -114.50 -0.34 -13.02 16 12 C 0.11 1.95 6.11 -3.59 -0.02 1.93 16 13 C -0.14 -1.97 6.11 -26.58 -0.16 -2.13 16 14 C -0.07 -0.94 5.78 -28.01 -0.16 -1.10 16 15 C -0.14 -2.55 5.76 -104.42 -0.60 -3.15 16 16 C -0.09 -1.43 9.44 -39.49 -0.37 -1.81 16 17 C -0.08 -1.44 6.32 -39.48 -0.25 -1.69 16 18 Cl -0.10 -1.51 28.95 -51.86 -1.50 -3.01 16 19 C -0.09 -1.72 9.83 -39.60 -0.39 -2.11 16 20 C -0.15 -3.32 8.86 -39.32 -0.35 -3.67 16 21 C 0.20 4.33 6.31 -83.69 -0.53 3.81 16 22 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.10 1.78 5.84 -51.93 -0.30 1.47 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 29 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.18 4.57 4.97 -53.73 -0.27 4.30 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -29.81 274.52 -8.33 -38.14 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -2.98 Total: 4.31 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.34 Total: -7.44 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.32 Total: -33.42 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.06 Total: -16.30 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.50 Total: -3.01 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.81 -8.33 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247710112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.412 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds