Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48498 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46927 * 299.99452 * 3 2 1 6 6 H 1.48496 * 109.47190 * 60.00002 * 3 2 1 7 7 C 1.40127 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.46149 * 120.00415 * 0.02562 * 7 2 1 10 10 O 1.21749 * 119.99485 * 351.78284 * 9 7 2 11 11 N 1.34777 * 120.00141 * 171.78292 * 9 7 2 12 12 C 1.46913 * 120.53419 * 353.76907 * 11 9 7 13 13 C 1.53434 * 107.80740 * 224.68673 * 12 11 9 14 14 C 1.52857 * 108.84652 * 296.79073 * 13 12 11 15 15 C 1.50591 * 110.47766 * 51.29580 * 14 13 12 16 16 C 1.38447 * 118.93426 * 159.54351 * 15 14 13 17 17 C 1.38281 * 120.30173 * 179.77485 * 16 15 14 18 18 Cl 1.73606 * 119.92180 * 179.97438 * 17 16 15 19 19 C 1.38472 * 120.15423 * 0.22414 * 17 16 15 20 20 C 1.37965 * 119.90692 * 359.54647 * 19 17 16 21 21 C 1.38732 * 121.49434 * 339.39790 * 15 14 13 22 22 H 0.97000 * 119.99358 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.79018 * 105.11566 * 12 11 9 24 24 H 1.08996 * 109.84373 * 344.29589 * 12 11 9 25 25 H 1.09003 * 109.57490 * 176.97369 * 13 12 11 26 26 H 1.09002 * 109.67464 * 56.66157 * 13 12 11 27 27 H 1.09008 * 109.29908 * 290.98634 * 14 13 12 28 28 H 1.09000 * 109.30246 * 171.61274 * 14 13 12 29 29 H 1.08004 * 119.84559 * 359.80335 * 16 15 14 30 30 H 1.07994 * 120.04560 * 179.80018 * 19 17 16 31 31 H 1.07998 * 119.98603 * 180.26578 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8817 2.3963 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0069 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2762 -2.4793 0.0005 10 8 0.0680 -2.4846 0.1508 11 7 1.9397 -3.6405 -0.1658 12 6 3.3741 -3.6417 -0.4834 13 6 3.6057 -4.6638 -1.6041 14 6 3.2377 -6.0546 -1.0876 15 6 1.8629 -6.0419 -0.4734 16 6 1.1776 -7.2375 -0.3401 17 6 -0.0846 -7.2590 0.2242 18 17 -0.9353 -8.7637 0.3859 19 6 -0.6738 -6.0826 0.6558 20 6 0.0043 -4.8876 0.5310 21 6 1.2743 -4.8633 -0.0384 22 1 -0.4849 0.8401 -0.0004 23 1 3.9473 -3.9255 0.3992 24 1 3.6796 -2.6506 -0.8188 25 1 4.6546 -4.6497 -1.9001 26 1 2.9808 -4.4157 -2.4620 27 1 3.9650 -6.3642 -0.3369 28 1 3.2559 -6.7630 -1.9159 29 1 1.6313 -8.1575 -0.6780 30 1 -1.6610 -6.1011 1.0933 31 1 -0.4523 -3.9699 0.8712 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247710112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = -35.071704 kcal Electronic energy + Delta-G solvation = -17692.864508 eV Core-core repulsion = 14770.994460 eV Total energy + Delta-G solvation = -2921.870049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57670 -39.01373 -37.61771 -36.68133 -34.93591 -34.01103 -31.33523 -30.98387 -28.39112 -26.35737 -24.16423 -23.99641 -22.06470 -20.48757 -18.67662 -17.94763 -17.71085 -17.14150 -16.40958 -16.00420 -15.54745 -15.26679 -14.79982 -14.57084 -14.34275 -14.10645 -13.76905 -13.63979 -13.17157 -12.97612 -12.76631 -12.66226 -12.57319 -12.04879 -12.00334 -11.82799 -11.79394 -11.50074 -11.03721 -10.57714 -9.79900 -9.56057 -8.52366 -8.36902 -6.95561 0.32001 0.41809 1.25891 1.38644 1.39959 1.57649 2.16900 2.29779 2.55397 2.78216 3.49116 3.76564 3.93114 4.06391 4.15346 4.28060 4.38267 4.44478 4.71715 4.84840 4.87833 4.96028 5.01734 5.14431 5.21063 5.27590 5.33822 5.40385 5.46784 5.75063 5.76941 6.11189 6.43116 6.76008 7.16585 8.26557 8.53277 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030736 B = 0.005629 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.755639 B = 4973.207540 C = 5805.392660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.031 3.969 3 Si 0.999 3.001 4 H -0.241 1.241 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.527 3.473 10 O -0.598 6.598 11 N -0.577 5.577 12 C 0.102 3.898 13 C -0.128 4.128 14 C -0.067 4.067 15 C -0.134 4.134 16 C -0.080 4.080 17 C -0.080 4.080 18 Cl -0.074 7.074 19 C -0.097 4.097 20 C -0.184 4.184 21 C 0.169 3.831 22 H 0.278 0.722 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.132 0.868 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.716 -10.728 -2.149 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.164 1.164 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.118 0.882 9 C 0.336 3.664 10 O -0.485 6.485 11 N -0.299 5.299 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.103 4.103 15 C -0.138 4.138 16 C -0.099 4.099 17 C -0.108 4.108 18 Cl -0.046 7.046 19 C -0.117 4.117 20 C -0.205 4.205 21 C 0.070 3.930 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.179 0.821 30 H 0.150 0.850 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.910 -10.643 -2.073 13.421 hybrid contribution -0.588 0.825 0.237 1.041 sum 7.321 -9.818 -1.836 12.384 Atomic orbital electron populations 1.70136 1.09665 1.29443 1.35009 1.27031 0.95517 1.05034 0.91016 0.84934 0.79633 0.75084 0.78536 1.16398 1.19271 1.19568 1.21492 0.95125 0.89053 1.53481 0.88187 1.18881 0.86746 0.83680 0.77070 1.90390 1.16415 1.86078 1.55612 1.46096 1.11083 1.03638 1.69065 1.22056 0.79119 1.02012 0.98802 1.21876 1.03772 0.94106 0.96822 1.20440 0.90881 0.97955 1.01045 1.19781 0.99781 0.90453 1.03793 1.20938 0.92266 0.98239 0.98429 1.20751 0.95369 0.86556 1.08131 1.98310 1.77591 1.31768 1.96903 1.20993 1.00219 0.90491 0.99957 1.22219 0.96054 0.99741 1.02487 1.18335 0.92760 0.86887 0.95038 0.91177 0.90901 0.88852 0.86392 0.93168 0.88572 0.87963 0.82101 0.85025 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.82 11.86 21.85 0.26 -47.56 16 2 C 0.03 1.61 5.50 85.33 0.47 2.08 16 3 Si 1.00 38.58 29.56 68.60 2.03 40.60 16 4 H -0.24 -8.42 7.11 99.48 0.71 -7.72 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.56 -29.81 8.64 24.78 0.21 -29.60 16 8 H 0.10 4.70 6.11 -2.91 -0.02 4.69 16 9 C 0.53 29.86 7.46 86.30 0.64 30.51 16 10 O -0.60 -38.58 11.73 -4.50 -0.05 -38.63 16 11 N -0.58 -26.59 2.96 -634.37 -1.88 -28.47 16 12 C 0.10 3.46 6.11 86.45 0.53 3.99 16 13 C -0.13 -3.28 6.11 30.69 0.19 -3.09 16 14 C -0.07 -1.56 5.78 29.77 0.17 -1.39 16 15 C -0.13 -4.43 5.76 -19.73 -0.11 -4.55 16 16 C -0.08 -2.35 9.44 22.33 0.21 -2.14 16 17 C -0.08 -2.61 6.32 22.34 0.14 -2.47 16 18 Cl -0.07 -2.02 28.95 -2.72 -0.08 -2.10 16 19 C -0.10 -3.74 9.83 22.26 0.22 -3.52 16 20 C -0.18 -8.59 8.86 22.44 0.20 -8.39 16 21 C 0.17 7.32 6.31 38.22 0.24 7.56 16 22 H 0.28 14.76 8.29 -92.71 -0.77 13.99 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.09 3.24 5.84 -2.39 -0.01 3.23 16 25 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16 29 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.14 7.75 4.97 -22.57 -0.11 7.64 16 Total: -1.00 -71.10 274.52 4.45 -66.64 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 1.06 Total: 20.51 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 3.11 Total: -11.00 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.62 Total: -76.03 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.05 Total: -38.63 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -71.10 4.45 -66.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247710112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.572 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds