Wall clock time and date at job start Mon Mar 30 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21695 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.46426 * 120.00221 * 179.97438 * 11 10 9 14 14 C 1.34799 * 120.00151 * 180.02562 * 13 11 10 15 15 C 1.47216 * 120.00180 * 180.02562 * 14 13 11 16 16 C 1.39856 * 120.16516 * 180.02562 * 15 14 13 17 17 C 1.37877 * 119.85087 * 180.02562 * 16 15 14 18 18 C 1.38404 * 120.18716 * 359.97438 * 17 16 15 19 19 C 1.38485 * 120.33064 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.92824 * 179.97438 * 19 18 17 21 21 C 1.38034 * 120.14531 * 359.76727 * 19 18 17 22 22 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 24 24 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 25 25 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.99737 * 0.02562 * 13 11 10 27 27 H 1.07999 * 120.00111 * 0.02562 * 14 13 11 28 28 H 1.08002 * 120.07529 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.90473 * 180.02562 * 17 16 15 30 30 H 1.08001 * 119.83066 * 180.02562 * 18 17 16 31 31 H 1.08006 * 120.09761 * 180.25004 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5578 -5.1057 0.0011 13 6 2.7058 -5.9962 0.0005 14 6 2.2565 -7.2671 0.0005 15 6 3.2132 -8.3860 0.0005 16 6 2.7509 -9.7060 -0.0001 17 6 3.6526 -10.7490 0.0005 18 6 5.0128 -10.4930 0.0010 19 6 5.4790 -9.1890 0.0005 20 17 7.1873 -8.8799 0.0018 21 6 4.5884 -8.1344 -0.0054 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6243 -2.5567 0.8903 25 1 3.1570 -3.4352 0.0009 26 1 3.7676 -5.7988 0.0001 27 1 1.1947 -7.4646 0.0005 28 1 1.6899 -9.9078 -0.0001 29 1 3.2965 -11.7686 -0.0003 30 1 5.7140 -11.3144 0.0010 31 1 4.9528 -7.1177 -0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253458336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:45 Heat of formation + Delta-G solvation = -14.639389 kcal Electronic energy + Delta-G solvation = -16022.739149 eV Core-core repulsion = 13101.755112 eV Total energy + Delta-G solvation = -2920.984037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67758 -38.72110 -36.76358 -34.40915 -33.89153 -32.33626 -31.08445 -29.89515 -27.35127 -24.48967 -23.06425 -22.43779 -20.72100 -19.23110 -17.71370 -17.02801 -16.01056 -15.66819 -15.48403 -14.99270 -14.30981 -14.28329 -13.97875 -13.86513 -13.83456 -12.93741 -12.26536 -12.05883 -12.00259 -11.87106 -11.81236 -11.42398 -11.14884 -10.95401 -10.93253 -10.34608 -10.33176 -9.39962 -9.21736 -9.13297 -8.76018 -8.46141 -7.87776 -6.17987 -4.24991 0.38252 0.90303 1.83213 1.94549 3.23127 3.30265 3.33396 3.40647 3.94800 4.00647 4.33349 4.44624 4.56557 4.78688 4.90134 5.02604 5.09039 5.18364 5.31528 5.52543 5.66855 5.81861 5.92179 6.00350 6.36901 6.42415 6.52406 7.29212 7.39277 7.49358 7.65343 7.95054 8.58951 8.75556 9.05236 9.41667 10.92316 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.003280 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.614644 B = 8535.475004 C = 9510.944197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.703 5.703 11 C 0.524 3.476 12 O -0.558 6.558 13 C -0.175 4.175 14 C -0.057 4.057 15 C -0.044 4.044 16 C -0.098 4.098 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.034 4.034 20 Cl -0.071 7.071 21 C -0.102 4.102 22 H 0.266 0.734 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.392 0.608 26 H 0.125 0.875 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 -20.703 -0.006 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.350 5.350 11 C 0.311 3.689 12 O -0.440 6.440 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.044 4.044 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.060 4.060 20 Cl -0.042 7.042 21 C -0.120 4.120 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.225 0.775 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.642 -20.633 -0.006 23.216 hybrid contribution 1.110 1.099 0.000 1.562 sum 11.752 -19.534 -0.006 22.797 Atomic orbital electron populations 1.69981 1.06116 1.27235 1.48944 1.24956 0.94924 0.99495 0.94663 0.86352 0.79842 0.82905 0.77762 1.19605 1.20777 1.20781 1.21264 0.93336 0.90415 1.53179 0.91784 1.19158 0.88336 0.81936 0.97897 1.46419 1.11262 1.06145 1.71154 1.18272 0.88408 0.83765 0.78449 1.90772 1.16501 1.85141 1.51570 1.23306 0.99972 0.93673 1.02651 1.22224 0.99315 0.90860 0.95246 1.19044 0.92141 0.93633 0.99619 1.21511 1.00549 0.91432 0.98140 1.21062 0.92180 0.99638 0.99736 1.21155 0.96315 0.94971 1.00562 1.20822 0.84988 0.94764 1.05450 1.98382 1.12682 1.96167 1.96961 1.21372 0.91943 0.99068 0.99624 0.92471 0.95333 0.95324 0.77512 0.85719 0.84219 0.84711 0.84801 0.84959 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 N -0.70 -14.90 5.54 -62.88 -0.35 -15.24 16 11 C 0.52 10.57 7.74 -12.96 -0.10 10.47 16 12 O -0.56 -13.46 16.23 5.19 0.08 -13.38 16 13 C -0.18 -2.57 9.41 -37.51 -0.35 -2.92 16 14 C -0.06 -0.74 9.46 -37.16 -0.35 -1.09 16 15 C -0.04 -0.48 5.87 -105.06 -0.62 -1.10 16 16 C -0.10 -0.89 9.80 -39.11 -0.38 -1.27 16 17 C -0.11 -0.83 10.03 -39.65 -0.40 -1.23 16 18 C -0.11 -0.92 9.82 -39.43 -0.39 -1.31 16 19 C -0.03 -0.33 6.31 -39.56 -0.25 -0.58 16 20 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 21 C -0.10 -1.07 9.19 -39.07 -0.36 -1.43 16 22 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.39 7.06 8.30 -40.82 -0.34 6.72 16 26 H 0.13 1.46 6.07 -52.49 -0.32 1.14 16 27 H 0.14 1.90 7.52 -52.49 -0.39 1.51 16 28 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 1.37 6.17 -52.48 -0.32 1.04 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -32.02 297.08 -8.24 -40.26 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.02 Total: 2.91 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.64 Total: -7.33 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.39 Total: -40.59 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.02 -8.24 -40.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253458336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.619 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds