Wall clock time and date at job start Mon Mar 30 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21695 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.46426 * 120.00221 * 179.97438 * 11 10 9 14 14 C 1.34799 * 120.00151 * 180.02562 * 13 11 10 15 15 C 1.47216 * 120.00180 * 180.02562 * 14 13 11 16 16 C 1.39856 * 120.16516 * 180.02562 * 15 14 13 17 17 C 1.37877 * 119.85087 * 180.02562 * 16 15 14 18 18 C 1.38404 * 120.18716 * 359.97438 * 17 16 15 19 19 C 1.38485 * 120.33064 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.92824 * 179.97438 * 19 18 17 21 21 C 1.38034 * 120.14531 * 359.76727 * 19 18 17 22 22 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 24 24 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 25 25 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.99737 * 0.02562 * 13 11 10 27 27 H 1.07999 * 120.00111 * 0.02562 * 14 13 11 28 28 H 1.08002 * 120.07529 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.90473 * 180.02562 * 17 16 15 30 30 H 1.08001 * 119.83066 * 180.02562 * 18 17 16 31 31 H 1.08006 * 120.09761 * 180.25004 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5578 -5.1057 0.0011 13 6 2.7058 -5.9962 0.0005 14 6 2.2565 -7.2671 0.0005 15 6 3.2132 -8.3860 0.0005 16 6 2.7509 -9.7060 -0.0001 17 6 3.6526 -10.7490 0.0005 18 6 5.0128 -10.4930 0.0010 19 6 5.4790 -9.1890 0.0005 20 17 7.1873 -8.8799 0.0018 21 6 4.5884 -8.1344 -0.0054 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6243 -2.5567 0.8903 25 1 3.1570 -3.4352 0.0009 26 1 3.7676 -5.7988 0.0001 27 1 1.1947 -7.4646 0.0005 28 1 1.6899 -9.9078 -0.0001 29 1 3.2965 -11.7686 -0.0003 30 1 5.7140 -11.3144 0.0010 31 1 4.9528 -7.1177 -0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253458336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:45 Heat of formation + Delta-G solvation = -35.006591 kcal Electronic energy + Delta-G solvation = -16023.622337 eV Core-core repulsion = 13101.755112 eV Total energy + Delta-G solvation = -2921.867225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71652 -40.10040 -37.49265 -36.22743 -35.03587 -34.35429 -31.78890 -30.96889 -29.23937 -25.84372 -24.32401 -23.55943 -22.07316 -20.65724 -19.00809 -18.29250 -17.48808 -17.07401 -16.52346 -16.36111 -16.08712 -15.75641 -14.99911 -14.69919 -14.59651 -14.43649 -14.05427 -13.98115 -13.22167 -12.91221 -12.78307 -12.72473 -12.60805 -12.27247 -12.21630 -11.85539 -11.47281 -11.27864 -10.94128 -10.82921 -9.92508 -9.83072 -9.29265 -8.30330 -6.47043 -0.53598 0.20238 0.93276 1.12029 1.43092 1.44248 1.57851 2.31114 2.31830 2.58649 2.77715 3.04771 3.58412 3.75024 4.00531 4.10439 4.19311 4.26774 4.37340 4.58546 4.87924 4.98770 5.05084 5.18895 5.21754 5.27823 5.39155 5.45732 5.53830 5.69214 5.77389 5.83102 6.63621 6.87379 7.21772 7.43725 8.82260 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.003280 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.614644 B = 8535.475004 C = 9510.944197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.701 5.701 11 C 0.523 3.477 12 O -0.608 6.608 13 C -0.200 4.200 14 C -0.022 4.022 15 C -0.069 4.069 16 C -0.094 4.094 17 C -0.104 4.104 18 C -0.102 4.102 19 C -0.049 4.049 20 Cl -0.071 7.071 21 C -0.105 4.105 22 H 0.269 0.731 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.410 0.590 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 -22.250 -0.006 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.141 3.859 10 N -0.349 5.349 11 C 0.314 3.686 12 O -0.493 6.493 13 C -0.220 4.220 14 C -0.042 4.042 15 C -0.070 4.070 16 C -0.112 4.112 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.075 4.075 20 Cl -0.042 7.042 21 C -0.124 4.124 22 H 0.078 0.922 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.245 0.755 26 H 0.174 0.826 27 H 0.149 0.851 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.173 0.827 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.147 -22.209 -0.007 25.809 hybrid contribution 0.335 1.319 0.000 1.361 sum 13.482 -20.890 -0.007 24.863 Atomic orbital electron populations 1.70139 1.08270 1.28563 1.49959 1.26077 0.95804 1.03940 0.93803 0.85092 0.79061 0.77221 0.77722 1.17663 1.20383 1.20392 1.21649 0.94341 0.90541 1.52919 0.89788 1.18595 0.88724 0.84284 0.94273 1.46131 1.11316 1.05541 1.71887 1.19107 0.88681 0.84417 0.76430 1.90735 1.19022 1.85799 1.53719 1.22976 1.00055 0.91900 1.07077 1.22354 0.99499 0.91188 0.91121 1.18933 0.91865 0.93608 1.02564 1.21810 1.01886 0.90897 0.96646 1.21437 0.91598 1.00829 0.98303 1.21542 0.97185 0.94965 0.98332 1.20958 0.84977 0.95307 1.06287 1.98383 1.12604 1.96241 1.97007 1.21454 0.91941 0.99646 0.99326 0.92191 0.99251 0.99242 0.75458 0.82590 0.85150 0.83128 0.81503 0.82723 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.56 -30.69 9.28 25.60 0.24 -30.46 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.26 14.80 5.43 85.63 0.46 15.27 16 10 N -0.70 -30.68 5.54 -471.07 -2.61 -33.29 16 11 C 0.52 21.90 7.74 86.37 0.67 22.57 16 12 O -0.61 -30.96 16.23 -4.33 -0.07 -31.03 16 13 C -0.20 -5.81 9.41 23.61 0.22 -5.59 16 14 C -0.02 -0.55 9.46 23.84 0.23 -0.33 16 15 C -0.07 -1.39 5.87 -20.15 -0.12 -1.51 16 16 C -0.09 -1.43 9.80 22.58 0.22 -1.21 16 17 C -0.10 -1.19 10.03 22.22 0.22 -0.96 16 18 C -0.10 -1.32 9.82 22.37 0.22 -1.11 16 19 C -0.05 -0.83 6.31 22.28 0.14 -0.69 16 20 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 21 C -0.11 -2.01 9.19 22.60 0.21 -1.81 16 22 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 23 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.41 14.78 8.30 -92.71 -0.77 14.01 16 26 H 0.16 3.46 6.07 -2.91 -0.02 3.45 16 27 H 0.13 3.57 7.52 -2.91 -0.02 3.55 16 28 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.14 2.54 6.17 -2.91 -0.02 2.52 16 Total: -1.00 -72.53 297.08 3.12 -69.41 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.39 Total: 13.00 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 3.17 Total: -5.18 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -2.33 Total: -89.56 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.07 Total: -31.03 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -72.53 3.12 -69.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253458336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.404 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds