Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46876 * 299.99746 * 3 2 1 6 6 H 1.48497 * 109.47298 * 60.00001 * 3 2 1 7 7 C 1.37870 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00856 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47498 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47545 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00012 * 180.02562 * 12 11 10 14 14 O 1.21782 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.41468 * 119.99795 * 180.27149 * 13 12 11 16 16 C 1.35657 * 119.99885 * 186.36364 * 15 13 12 17 17 C 1.41580 * 119.99678 * 9.82316 * 16 15 13 18 18 C 1.37047 * 125.47444 * 224.65566 * 17 16 15 19 19 C 1.37432 * 113.22262 * 179.84094 * 18 17 16 20 20 C 1.33858 * 115.12856 * 0.45727 * 19 18 17 21 21 S 1.70611 * 111.01356 * 359.74414 * 20 19 18 22 22 H 0.97001 * 120.00326 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47036 * 59.99606 * 9 7 2 24 24 H 1.09001 * 109.46732 * 300.00224 * 9 7 2 25 25 H 1.08998 * 109.47112 * 60.00143 * 10 9 7 26 26 H 1.09001 * 109.47372 * 299.99906 * 10 9 7 27 27 H 1.08998 * 109.46967 * 59.99848 * 11 10 9 28 28 H 1.09006 * 109.46834 * 299.99848 * 11 10 9 29 29 H 0.97001 * 119.99820 * 359.97438 * 12 11 10 30 30 H 1.08005 * 120.00248 * 6.36687 * 15 13 12 31 31 H 1.08001 * 119.99967 * 189.81877 * 16 15 13 32 32 H 1.08003 * 123.38372 * 359.97438 * 18 17 16 33 33 H 1.08002 * 122.43365 * 180.20108 * 19 18 17 34 34 H 1.07996 * 124.49139 * 179.73250 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 7 2.4325 -6.1005 0.0024 13 6 1.9833 -7.3712 0.0024 14 8 0.7860 -7.5938 0.0025 15 6 2.9027 -8.4464 0.0085 16 6 2.4567 -9.7210 -0.1217 17 6 1.1067 -9.9663 -0.4705 18 6 0.2893 -10.8955 0.1183 19 6 -0.9770 -10.9190 -0.4153 20 6 -1.1905 -10.0502 -1.4110 21 16 0.2115 -9.1332 -1.7339 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5562 0.8920 25 1 2.8727 -3.6038 0.8909 26 1 2.8714 -3.6047 -0.8890 27 1 0.8535 -5.0449 -0.8877 28 1 0.8542 -5.0447 0.8923 29 1 3.3862 -5.9232 0.0019 30 1 3.9597 -8.2526 0.1170 31 1 3.1315 -10.5484 0.0407 32 1 0.6077 -11.5425 0.9223 33 1 -1.7428 -11.5926 -0.0601 34 1 -2.1261 -9.9439 -1.9398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255280926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = 10.775955 kcal Electronic energy + Delta-G solvation = -16709.518157 eV Core-core repulsion = 13927.513013 eV Total energy + Delta-G solvation = -2782.005144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85761 -37.72764 -35.52613 -33.73838 -33.30509 -31.26666 -28.87674 -26.81380 -24.77312 -23.34617 -21.89399 -20.68531 -19.75065 -19.39586 -17.50757 -16.54389 -16.20628 -15.63577 -15.21164 -14.93622 -14.48617 -14.26407 -13.86456 -13.37487 -12.98152 -12.67882 -12.38517 -12.28298 -12.10467 -11.80335 -11.66417 -10.92512 -10.77096 -10.71662 -10.56851 -10.09449 -9.86505 -9.68252 -9.36958 -9.10236 -8.89806 -8.37650 -8.18703 -7.64634 -6.01959 -4.05006 0.31919 1.61602 1.99841 2.22682 2.81837 3.29777 3.37229 3.40686 3.51777 3.64443 4.44352 4.81622 4.98203 5.11108 5.30613 5.33904 5.45621 5.55149 5.72304 5.80527 5.81789 6.07569 6.15095 6.19216 6.41789 6.53585 6.54565 6.61903 6.87351 7.02133 7.63980 7.76574 7.78712 7.97027 8.37804 8.46452 9.01976 9.59294 11.09352 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.003266 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.020670 B = 8571.749926 C = 9020.287638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.720 5.720 13 C 0.524 3.476 14 O -0.532 6.532 15 C -0.220 4.220 16 C 0.014 3.986 17 C -0.204 4.204 18 C -0.112 4.112 19 C -0.155 4.155 20 C -0.269 4.269 21 S 0.284 5.716 22 H 0.260 0.740 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.397 0.603 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 -22.201 -2.169 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.370 5.370 13 C 0.313 3.687 14 O -0.413 6.413 15 C -0.244 4.244 16 C -0.008 4.008 17 C -0.323 4.323 18 C -0.144 4.144 19 C -0.188 4.188 20 C -0.407 4.407 21 S 0.556 5.444 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.231 0.769 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.789 -21.050 -3.253 21.635 hybrid contribution 0.420 0.000 1.240 1.309 sum 4.208 -21.051 -2.013 21.561 Atomic orbital electron populations 1.69974 1.06060 1.26565 1.50684 1.25031 0.94855 0.99313 0.95297 0.86531 0.80055 0.83774 0.77601 1.19755 1.21002 1.20998 1.21246 0.93026 0.90954 1.50761 0.92606 1.19033 0.93867 0.90901 0.97628 1.21884 0.99745 0.93463 1.00808 1.21609 0.91909 0.85146 1.01912 1.46229 1.10625 1.06119 1.74015 1.17276 0.89210 0.83663 0.78544 1.90976 1.16669 1.84503 1.49127 1.22245 1.00498 0.93386 1.08298 1.20654 0.92472 0.96471 0.91196 1.22507 0.99160 1.04304 1.06282 1.20614 0.93454 0.99020 1.01292 1.19751 0.97637 1.02166 0.99198 1.25339 1.05530 1.03610 1.06215 1.82892 1.00977 1.32576 1.27915 0.92988 0.96295 0.96300 0.92790 0.92783 0.91788 0.91825 0.76941 0.84922 0.84392 0.84606 0.85218 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.37 5.27 -26.74 -0.14 -2.51 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.72 -10.31 5.55 -63.27 -0.35 -10.66 16 13 C 0.52 7.66 7.10 -15.03 -0.11 7.55 16 14 O -0.53 -9.39 11.54 5.12 0.06 -9.33 16 15 C -0.22 -2.38 9.82 -39.28 -0.39 -2.77 16 16 C 0.01 0.14 9.89 -39.23 -0.39 -0.25 16 17 C -0.20 -2.54 4.62 -38.74 -0.18 -2.72 16 18 C -0.11 -1.31 10.25 -40.31 -0.41 -1.73 16 19 C -0.16 -1.83 10.14 -41.41 -0.42 -2.25 16 20 C -0.27 -3.29 10.92 29.19 0.32 -2.97 16 21 S 0.28 3.74 19.33 -107.50 -2.08 1.66 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.40 4.56 8.43 -40.82 -0.34 4.21 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -32.66 307.40 -8.84 -41.50 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.54 Total: 0.42 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.29 Total: -18.56 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.39 Total: -36.82 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.06 Total: -9.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.08 Total: 1.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.66 -8.84 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255280926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.276 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds