Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99634 * 2 1 4 4 H 1.48500 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46876 * 299.99746 * 3 2 1 6 6 H 1.48497 * 109.47298 * 60.00001 * 3 2 1 7 7 C 1.37870 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00856 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47498 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47545 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00012 * 180.02562 * 12 11 10 14 14 O 1.21782 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.41468 * 119.99795 * 180.27149 * 13 12 11 16 16 C 1.35657 * 119.99885 * 186.36364 * 15 13 12 17 17 C 1.41580 * 119.99678 * 9.82316 * 16 15 13 18 18 C 1.37047 * 125.47444 * 224.65566 * 17 16 15 19 19 C 1.37432 * 113.22262 * 179.84094 * 18 17 16 20 20 C 1.33858 * 115.12856 * 0.45727 * 19 18 17 21 21 S 1.70611 * 111.01356 * 359.74414 * 20 19 18 22 22 H 0.97001 * 120.00326 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47036 * 59.99606 * 9 7 2 24 24 H 1.09001 * 109.46732 * 300.00224 * 9 7 2 25 25 H 1.08998 * 109.47112 * 60.00143 * 10 9 7 26 26 H 1.09001 * 109.47372 * 299.99906 * 10 9 7 27 27 H 1.08998 * 109.46967 * 59.99848 * 11 10 9 28 28 H 1.09006 * 109.46834 * 299.99848 * 11 10 9 29 29 H 0.97001 * 119.99820 * 359.97438 * 12 11 10 30 30 H 1.08005 * 120.00248 * 6.36687 * 15 13 12 31 31 H 1.08001 * 119.99967 * 189.81877 * 16 15 13 32 32 H 1.08003 * 123.38372 * 359.97438 * 18 17 16 33 33 H 1.08002 * 122.43365 * 180.20108 * 19 18 17 34 34 H 1.07996 * 124.49139 * 179.73250 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 7 2.4325 -6.1005 0.0024 13 6 1.9833 -7.3712 0.0024 14 8 0.7860 -7.5938 0.0025 15 6 2.9027 -8.4464 0.0085 16 6 2.4567 -9.7210 -0.1217 17 6 1.1067 -9.9663 -0.4705 18 6 0.2893 -10.8955 0.1183 19 6 -0.9770 -10.9190 -0.4153 20 6 -1.1905 -10.0502 -1.4110 21 16 0.2115 -9.1332 -1.7339 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5562 0.8920 25 1 2.8727 -3.6038 0.8909 26 1 2.8714 -3.6047 -0.8890 27 1 0.8535 -5.0449 -0.8877 28 1 0.8542 -5.0447 0.8923 29 1 3.3862 -5.9232 0.0019 30 1 3.9597 -8.2526 0.1170 31 1 3.1315 -10.5484 0.0407 32 1 0.6077 -11.5425 0.9223 33 1 -1.7428 -11.5926 -0.0601 34 1 -2.1261 -9.9439 -1.9398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255280926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = -9.710652 kcal Electronic energy + Delta-G solvation = -16710.406523 eV Core-core repulsion = 13927.513013 eV Total energy + Delta-G solvation = -2782.893510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97588 -38.64563 -37.00565 -35.19860 -34.64781 -33.03855 -29.95860 -28.46387 -25.98691 -24.79031 -23.12603 -22.29346 -20.81891 -20.39000 -18.62763 -18.42039 -17.39788 -16.77660 -16.55588 -16.38338 -16.06220 -15.33299 -15.16860 -14.56294 -14.17607 -13.86528 -13.72519 -13.58699 -13.54380 -13.21818 -12.91392 -12.75406 -12.54177 -12.33240 -11.72615 -11.65244 -11.56779 -11.22589 -10.97164 -10.56830 -10.56713 -10.10629 -9.13682 -8.64737 -8.20080 -6.31752 -0.56683 0.71962 1.08228 1.30185 1.41481 1.41621 1.55015 1.91043 2.38268 2.47267 2.54048 3.13664 4.00126 4.12559 4.23191 4.25468 4.26071 4.54698 4.57117 4.63887 4.74226 4.95591 4.97903 5.02727 5.16409 5.26722 5.32695 5.48080 5.51456 5.57516 5.70079 5.70349 5.83713 6.21924 6.70616 6.86222 7.36777 7.38349 8.92258 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.003266 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.020670 B = 8571.749926 C = 9020.287638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.134 3.866 12 N -0.713 5.713 13 C 0.516 3.484 14 O -0.568 6.568 15 C -0.228 4.228 16 C 0.023 3.977 17 C -0.213 4.213 18 C -0.118 4.118 19 C -0.162 4.162 20 C -0.280 4.280 21 S 0.232 5.768 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.413 0.587 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -23.244 -1.620 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.009 3.991 12 N -0.364 5.364 13 C 0.308 3.692 14 O -0.451 6.451 15 C -0.252 4.252 16 C 0.002 3.998 17 C -0.331 4.331 18 C -0.150 4.150 19 C -0.194 4.194 20 C -0.418 4.418 21 S 0.504 5.496 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.250 0.750 30 H 0.189 0.811 31 H 0.199 0.801 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.262 -22.114 -2.706 23.142 hybrid contribution -0.426 0.237 1.078 1.183 sum 5.836 -21.877 -1.628 22.700 Atomic orbital electron populations 1.70120 1.07972 1.27735 1.51768 1.26038 0.95758 1.03614 0.94775 0.85353 0.79214 0.78558 0.77630 1.18141 1.20552 1.20571 1.21714 0.93751 0.92012 1.50339 0.91534 1.18948 0.94458 0.93094 0.94942 1.21589 0.98393 0.91975 1.01994 1.21128 0.91989 0.85683 1.00292 1.46005 1.10881 1.05294 1.74269 1.17975 0.89460 0.84257 0.77513 1.90982 1.18519 1.84944 1.50650 1.22347 1.01509 0.92013 1.09316 1.21141 0.91855 0.97572 0.89244 1.22864 1.00378 1.03918 1.05989 1.21003 0.93267 0.99045 1.01646 1.20130 0.98454 1.02079 0.98735 1.25551 1.05593 1.03732 1.06918 1.83024 1.02618 1.34201 1.29738 0.92817 0.99038 0.99131 0.91508 0.91426 0.93436 0.93711 0.74994 0.81112 0.80066 0.81977 0.83134 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.29 21.44 0.28 -57.28 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.96 5.27 30.59 0.16 -3.80 16 11 C 0.13 4.79 5.67 86.38 0.49 5.28 16 12 N -0.71 -19.64 5.55 -472.25 -2.62 -22.26 16 13 C 0.52 14.57 7.10 85.04 0.60 15.17 16 14 O -0.57 -20.21 11.54 -4.61 -0.05 -20.26 16 15 C -0.23 -4.29 9.82 22.47 0.22 -4.07 16 16 C 0.02 0.40 9.89 22.50 0.22 0.62 16 17 C -0.21 -4.98 4.62 22.81 0.11 -4.88 16 18 C -0.12 -2.54 10.25 21.80 0.22 -2.32 16 19 C -0.16 -3.62 10.14 21.08 0.21 -3.40 16 20 C -0.28 -6.87 10.92 66.82 0.73 -6.14 16 21 S 0.23 6.20 19.33 -56.49 -1.09 5.11 16 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 23 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.75 16 29 H 0.41 8.53 8.43 -92.71 -0.78 7.75 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -72.39 307.40 2.67 -69.72 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.31 Total: 11.06 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.81 Total: -32.09 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.33 Total: -79.53 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.09 Total: 5.11 kcal Total: -72.39 2.67 -69.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255280926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.008 kcal (2) G-P(sol) polarization free energy of solvation -72.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds