Wall clock time and date at job start Mon Mar 30 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35014 * 120.00055 * 2 1 4 4 C 1.47094 * 120.00139 * 352.88412 * 3 2 1 5 5 C 1.39900 * 120.16130 * 143.32699 * 4 3 2 6 6 C 1.37830 * 119.83730 * 179.97438 * 5 4 3 7 7 C 1.38558 * 120.15770 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 119.83418 * 179.97438 * 7 6 5 9 9 C 1.38551 * 120.32614 * 0.26172 * 7 6 5 10 10 C 1.37826 * 120.16208 * 359.47765 * 9 7 6 11 11 C 1.46185 * 119.99674 * 179.97438 * 2 1 3 12 12 O 1.21761 * 120.00168 * 180.02562 * 11 2 1 13 13 N 1.34783 * 120.00277 * 0.02562 * 11 2 1 14 14 C 1.36718 * 120.00067 * 180.02562 * 13 11 2 15 15 H 1.08001 * 119.99943 * 359.97438 * 14 13 11 16 16 C 1.39122 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31333 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00252 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47256 * 119.99989 * 18 16 14 21 21 H 1.48496 * 109.47267 * 239.99974 * 18 16 14 22 22 H 1.09002 * 109.47117 * 87.51872 * 1 2 3 23 23 H 1.08995 * 109.47265 * 207.51927 * 1 2 3 24 24 H 1.09008 * 109.46759 * 327.52230 * 1 2 3 25 25 H 1.08000 * 119.99700 * 172.88212 * 3 2 1 26 26 H 1.07997 * 120.08495 * 359.97438 * 5 4 3 27 27 H 1.08001 * 119.91706 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.91727 * 179.72079 * 9 7 6 29 29 H 1.07998 * 120.08170 * 180.25330 * 10 9 7 30 30 H 0.97005 * 119.99640 * 359.97438 * 13 11 2 31 31 H 0.96993 * 119.99497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1693 0.0000 4 6 1.4552 2.4382 -0.1578 5 6 1.8673 3.5763 0.5438 6 6 1.1816 4.7621 0.3905 7 6 0.0869 4.8287 -0.4563 8 17 -0.7710 6.3264 -0.6426 9 6 -0.3299 3.7045 -1.1506 10 6 0.3492 2.5133 -1.0114 11 6 2.2379 -1.2660 0.0006 12 8 3.4555 -1.2661 0.0010 13 7 1.5640 -2.4333 0.0006 14 6 2.2475 -3.6173 0.0016 15 1 3.3276 -3.6173 0.0020 16 6 1.5519 -4.8221 0.0022 17 7 0.2386 -4.8220 0.0011 18 14 2.4858 -6.4398 0.0029 19 1 3.9460 -6.1686 0.0034 20 1 2.1271 -7.2180 1.2157 21 1 2.1271 -7.2191 -1.2092 22 1 -0.3633 0.0445 -1.0267 23 1 -0.3633 -0.9113 0.4748 24 1 -0.3633 0.8670 0.5519 25 1 3.2559 1.1728 0.1159 26 1 2.7206 3.5260 1.2038 27 1 1.4983 5.6413 0.9318 28 1 -1.1868 3.7628 -1.8055 29 1 0.0256 1.6388 -1.5564 30 1 0.5939 -2.4332 0.0006 31 1 -0.2463 -5.6620 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255602970.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:27 Heat of formation + Delta-G solvation = -11.987685 kcal Electronic energy + Delta-G solvation = -16597.117680 eV Core-core repulsion = 13676.248629 eV Total energy + Delta-G solvation = -2920.869051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52078 -38.30879 -36.62874 -34.53737 -33.97010 -31.53643 -31.21759 -29.95626 -26.79559 -25.37059 -22.97426 -22.68743 -20.75901 -18.41941 -17.86912 -16.82289 -16.15675 -15.33771 -15.15992 -14.78329 -14.19677 -13.97905 -13.65038 -13.56209 -13.39186 -13.01023 -12.38258 -12.27543 -11.78419 -11.70232 -11.51228 -11.40041 -11.21488 -11.02570 -10.84166 -10.42052 -10.34342 -9.71466 -9.32157 -9.10233 -8.49510 -8.14265 -7.92260 -6.62185 -3.92674 0.74869 1.26288 2.03842 2.14926 3.11398 3.18674 3.26110 3.65693 4.05179 4.25995 4.69960 4.76404 4.79514 5.19814 5.21240 5.24506 5.34156 5.40889 5.63062 5.71910 5.82751 5.94190 6.10084 6.17685 6.20388 6.31416 6.45942 6.74590 6.92783 7.01824 7.37619 7.92553 8.46466 9.01708 9.38272 9.95241 10.54550 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.055481 B = 0.003410 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.554717 B = 8210.156271 C = 8602.986037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.110 4.110 4 C -0.030 4.030 5 C -0.101 4.101 6 C -0.111 4.111 7 C -0.045 4.045 8 Cl -0.082 7.082 9 C -0.110 4.110 10 C -0.105 4.105 11 C 0.456 3.544 12 O -0.602 6.602 13 N -0.540 5.540 14 C -0.294 4.294 15 H 0.109 0.891 16 C 0.023 3.977 17 N -0.887 5.887 18 Si 0.934 3.066 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.395 0.605 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 15.810 -0.588 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.113 4.113 3 C -0.131 4.131 4 C -0.030 4.030 5 C -0.120 4.120 6 C -0.129 4.129 7 C -0.071 4.071 8 Cl -0.053 7.053 9 C -0.128 4.128 10 C -0.123 4.123 11 C 0.245 3.755 12 O -0.490 6.490 13 N -0.174 5.174 14 C -0.424 4.424 15 H 0.126 0.874 16 C -0.181 4.181 17 N -0.527 5.527 18 Si 0.760 3.240 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.230 0.770 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.694 15.707 -0.603 16.147 hybrid contribution -0.334 -0.695 -0.004 0.771 sum -4.027 15.012 -0.607 15.555 Atomic orbital electron populations 1.21141 0.92172 1.03045 1.02080 1.22087 0.95493 0.94247 0.99506 1.21824 0.99804 0.89216 1.02292 1.19220 0.94548 0.93759 0.95476 1.21324 1.00045 0.91349 0.99248 1.20926 0.94774 0.98739 0.98488 1.20997 0.96648 0.87521 1.01948 1.98353 1.76796 1.33327 1.96869 1.20964 1.00698 0.91363 0.99822 1.21668 0.94743 0.97649 0.98215 1.17565 0.87618 0.83599 0.86703 1.90647 1.13277 1.87194 1.57886 1.41953 1.09610 1.04890 1.60901 1.19910 0.93856 0.82270 1.46366 0.87356 1.25420 0.95692 1.00189 0.96749 1.69581 1.06190 1.28748 1.48138 0.85720 0.79838 0.80467 0.77930 1.18928 1.20480 1.20473 0.90907 0.91101 0.91172 0.84750 0.84813 0.85146 0.85053 0.84133 0.76990 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 7.87 36.01 0.28 -1.66 16 2 C -0.11 -2.06 5.91 -102.58 -0.61 -2.66 16 3 C -0.11 -1.85 9.33 -37.14 -0.35 -2.20 16 4 C -0.03 -0.41 5.16 -105.06 -0.54 -0.95 16 5 C -0.10 -1.22 9.80 -39.11 -0.38 -1.60 16 6 C -0.11 -1.21 9.81 -39.61 -0.39 -1.60 16 7 C -0.04 -0.50 6.33 -39.35 -0.25 -0.75 16 8 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 9 C -0.11 -1.24 9.81 -39.62 -0.39 -1.63 16 10 C -0.10 -1.31 7.79 -39.11 -0.30 -1.61 16 11 C 0.46 11.06 7.67 -13.07 -0.10 10.96 16 12 O -0.60 -16.72 15.81 5.13 0.08 -16.64 16 13 N -0.54 -13.64 5.21 -12.32 -0.06 -13.70 16 14 C -0.29 -8.05 9.68 -15.05 -0.15 -8.19 16 15 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 16 C 0.02 0.60 5.50 -17.44 -0.10 0.50 16 17 N -0.89 -23.20 13.05 55.51 0.72 -22.48 16 18 Si 0.93 20.27 29.55 -169.99 -5.02 15.24 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16 23 H 0.07 1.14 6.56 -51.93 -0.34 0.80 16 24 H 0.07 0.95 6.57 -51.92 -0.34 0.61 16 25 H 0.13 2.40 7.54 -52.49 -0.40 2.00 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.14 1.67 5.49 -52.49 -0.29 1.38 16 30 H 0.39 9.40 5.91 -40.82 -0.24 9.16 16 31 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -29.73 286.83 -7.46 -37.19 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.73 Total: 9.81 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.27 Total: -11.39 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.66 Total: -36.18 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.73 -7.46 -37.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255602970.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.201 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds