Wall clock time and date at job start Mon Mar 30 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35014 * 120.00055 * 2 1 4 4 C 1.47094 * 120.00139 * 352.88412 * 3 2 1 5 5 C 1.39900 * 120.16130 * 143.32699 * 4 3 2 6 6 C 1.37830 * 119.83730 * 179.97438 * 5 4 3 7 7 C 1.38558 * 120.15770 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 119.83418 * 179.97438 * 7 6 5 9 9 C 1.38551 * 120.32614 * 0.26172 * 7 6 5 10 10 C 1.37826 * 120.16208 * 359.47765 * 9 7 6 11 11 C 1.46185 * 119.99674 * 179.97438 * 2 1 3 12 12 O 1.21761 * 120.00168 * 180.02562 * 11 2 1 13 13 N 1.34783 * 120.00277 * 0.02562 * 11 2 1 14 14 C 1.36718 * 120.00067 * 180.02562 * 13 11 2 15 15 H 1.08001 * 119.99943 * 359.97438 * 14 13 11 16 16 C 1.39122 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31333 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00252 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47378 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47256 * 119.99989 * 18 16 14 21 21 H 1.48496 * 109.47267 * 239.99974 * 18 16 14 22 22 H 1.09002 * 109.47117 * 87.51872 * 1 2 3 23 23 H 1.08995 * 109.47265 * 207.51927 * 1 2 3 24 24 H 1.09008 * 109.46759 * 327.52230 * 1 2 3 25 25 H 1.08000 * 119.99700 * 172.88212 * 3 2 1 26 26 H 1.07997 * 120.08495 * 359.97438 * 5 4 3 27 27 H 1.08001 * 119.91706 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.91727 * 179.72079 * 9 7 6 29 29 H 1.07998 * 120.08170 * 180.25330 * 10 9 7 30 30 H 0.97005 * 119.99640 * 359.97438 * 13 11 2 31 31 H 0.96993 * 119.99497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1821 1.1693 0.0000 4 6 1.4552 2.4382 -0.1578 5 6 1.8673 3.5763 0.5438 6 6 1.1816 4.7621 0.3905 7 6 0.0869 4.8287 -0.4563 8 17 -0.7710 6.3264 -0.6426 9 6 -0.3299 3.7045 -1.1506 10 6 0.3492 2.5133 -1.0114 11 6 2.2379 -1.2660 0.0006 12 8 3.4555 -1.2661 0.0010 13 7 1.5640 -2.4333 0.0006 14 6 2.2475 -3.6173 0.0016 15 1 3.3276 -3.6173 0.0020 16 6 1.5519 -4.8221 0.0022 17 7 0.2386 -4.8220 0.0011 18 14 2.4858 -6.4398 0.0029 19 1 3.9460 -6.1686 0.0034 20 1 2.1271 -7.2180 1.2157 21 1 2.1271 -7.2191 -1.2092 22 1 -0.3633 0.0445 -1.0267 23 1 -0.3633 -0.9113 0.4748 24 1 -0.3633 0.8670 0.5519 25 1 3.2559 1.1728 0.1159 26 1 2.7206 3.5260 1.2038 27 1 1.4983 5.6413 0.9318 28 1 -1.1868 3.7628 -1.8055 29 1 0.0256 1.6388 -1.5564 30 1 0.5939 -2.4332 0.0006 31 1 -0.2463 -5.6620 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255602970.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:27 Heat of formation + Delta-G solvation = -29.154268 kcal Electronic energy + Delta-G solvation = -16597.862079 eV Core-core repulsion = 13676.248629 eV Total energy + Delta-G solvation = -2921.613449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73798 -39.94218 -37.54843 -36.20728 -35.62525 -33.41974 -32.19107 -31.13255 -28.04217 -27.26635 -24.35441 -23.62288 -22.15108 -20.31460 -19.44722 -17.84190 -17.71281 -16.93297 -16.35223 -16.16708 -15.82121 -15.56472 -14.99107 -14.70312 -14.57921 -14.36141 -13.69403 -13.60277 -13.43602 -12.97598 -12.90953 -12.57291 -12.48409 -12.32859 -12.22012 -12.12214 -11.73080 -11.61421 -10.56894 -10.41830 -10.12189 -10.00417 -9.12544 -8.57406 -6.00592 -0.37517 0.35643 0.82451 1.15648 1.40862 1.41232 1.55496 2.26192 2.37541 2.72212 3.14694 3.24130 3.82961 3.89033 3.93793 4.05966 4.25132 4.34672 4.42034 4.61547 4.71559 4.80598 5.00545 5.04144 5.17858 5.25083 5.28003 5.33517 5.57358 5.66302 5.80113 5.96364 6.50647 7.02451 7.44683 8.02273 8.59863 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.055481 B = 0.003410 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.554717 B = 8210.156271 C = 8602.986037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.144 4.144 3 C -0.070 4.070 4 C -0.058 4.058 5 C -0.096 4.096 6 C -0.110 4.110 7 C -0.042 4.042 8 Cl -0.070 7.070 9 C -0.111 4.111 10 C -0.100 4.100 11 C 0.454 3.546 12 O -0.646 6.646 13 N -0.550 5.550 14 C -0.339 4.339 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.908 5.908 18 Si 0.998 3.002 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.267 1.267 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.400 0.600 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 17.655 -0.731 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C -0.091 4.091 4 C -0.058 4.058 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.068 4.068 8 Cl -0.041 7.041 9 C -0.129 4.129 10 C -0.118 4.118 11 C 0.245 3.755 12 O -0.537 6.537 13 N -0.184 5.184 14 C -0.468 4.468 15 H 0.100 0.900 16 C -0.210 4.210 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.192 1.192 22 H 0.109 0.891 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.165 0.835 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.236 0.764 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.948 17.575 -0.746 18.274 hybrid contribution 0.060 -0.911 0.030 0.914 sum -4.888 16.664 -0.716 17.381 Atomic orbital electron populations 1.21081 0.89352 1.03224 1.03426 1.21859 0.97272 0.91901 1.03635 1.21962 0.99250 0.90293 0.97551 1.19085 0.95884 0.92782 0.98034 1.21488 1.00205 0.90958 0.98723 1.21166 0.94345 0.99047 0.98328 1.21229 0.96412 0.88031 1.01141 1.98368 1.76468 1.32485 1.96752 1.21173 1.01094 0.90730 0.99932 1.21737 0.93975 0.98464 0.97652 1.18465 0.87399 0.85135 0.84473 1.90595 1.15505 1.88242 1.59399 1.41926 1.09728 1.04787 1.61950 1.19813 0.93061 0.84017 1.49946 0.90034 1.26184 0.96598 1.02671 0.95540 1.69628 1.06998 1.29900 1.48233 0.84804 0.78033 0.76474 0.78634 1.19716 1.19234 1.19181 0.89114 0.92473 0.89084 0.86386 0.83549 0.82857 0.82972 0.83644 0.76406 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.38 7.87 71.24 0.56 -2.82 16 2 C -0.14 -5.43 5.91 -18.54 -0.11 -5.54 16 3 C -0.07 -2.32 9.33 23.85 0.22 -2.09 16 4 C -0.06 -1.47 5.16 -20.15 -0.10 -1.58 16 5 C -0.10 -2.04 9.80 22.58 0.22 -1.81 16 6 C -0.11 -2.04 9.81 22.25 0.22 -1.82 16 7 C -0.04 -0.79 6.33 22.42 0.14 -0.65 16 8 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 9 C -0.11 -2.12 9.81 22.25 0.22 -1.90 16 10 C -0.10 -2.24 7.79 22.58 0.18 -2.06 16 11 C 0.45 23.00 7.67 86.31 0.66 23.67 16 12 O -0.65 -37.76 15.81 -4.54 -0.07 -37.83 16 13 N -0.55 -29.01 5.21 -311.07 -1.62 -30.63 16 14 C -0.34 -19.40 9.68 84.14 0.81 -18.59 16 15 H 0.08 4.99 7.15 -2.91 -0.02 4.97 16 16 C -0.01 -0.44 5.50 84.98 0.47 0.03 16 17 N -0.91 -48.00 13.05 21.69 0.28 -47.72 16 18 Si 1.00 42.09 29.55 68.60 2.03 44.12 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H 0.09 2.30 6.58 -2.39 -0.02 2.28 16 23 H 0.06 1.83 6.56 -2.39 -0.02 1.82 16 24 H 0.09 2.27 6.57 -2.38 -0.02 2.25 16 25 H 0.12 4.29 7.54 -2.91 -0.02 4.26 16 26 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.15 3.09 5.49 -2.91 -0.02 3.08 16 30 H 0.40 19.78 5.91 -92.70 -0.55 19.23 16 31 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.20 286.83 4.65 -61.55 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.63 Total: 26.96 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.49 Total: -15.17 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.34 Total: -78.35 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.07 Total: -37.83 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -66.20 4.65 -61.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255602970.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.396 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds