Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 117.00205 * 2 1 4 4 C 1.38189 * 120.07478 * 0.02562 * 3 2 1 5 5 C 1.38810 * 120.61620 * 179.97438 * 4 3 2 6 6 C 1.37702 * 120.41176 * 0.02562 * 5 4 3 7 7 Cl 1.73609 * 120.13584 * 179.97438 * 6 5 4 8 8 C 1.39837 * 119.72912 * 359.97438 * 6 5 4 9 9 C 1.46478 * 133.95581 * 180.02562 * 8 6 5 10 10 C 1.50700 * 126.49524 * 359.97338 * 9 8 6 11 11 C 1.50702 * 109.46869 * 85.00021 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.34244 * 107.01599 * 180.24296 * 9 8 6 20 20 N 1.36785 * 109.91134 * 359.59872 * 19 9 8 21 21 H 0.97005 * 125.08231 * 180.20890 * 20 19 9 22 22 C 1.37861 * 109.84203 * 0.41487 * 20 19 9 23 23 H 1.09006 * 109.46768 * 299.99692 * 1 2 3 24 24 H 1.09000 * 109.47385 * 59.99773 * 1 2 3 25 25 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.68950 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.79387 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47210 * 325.00314 * 10 9 8 29 29 H 1.08994 * 109.47551 * 204.99967 * 10 9 8 30 30 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 31 31 H 1.08006 * 125.04286 * 179.72302 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2953 2.3715 0.0005 5 6 1.9138 3.6142 0.0011 6 6 3.2875 3.7091 0.0006 7 17 4.0536 5.2670 0.0006 8 6 4.0630 2.5454 0.0000 9 6 5.5043 2.2841 -0.0001 10 6 6.6023 3.3163 -0.0003 11 6 6.8836 3.7506 1.4152 12 1 6.3236 3.3217 2.2330 13 6 7.8603 4.6908 1.6666 14 7 8.1095 5.0658 2.9023 15 14 8.8293 5.4322 0.2521 16 1 8.1342 6.6486 -0.2402 17 1 10.1905 5.7956 0.7214 18 1 8.9335 4.4416 -0.8494 19 6 5.6619 0.9510 -0.0062 20 7 4.4394 0.3374 -0.0009 21 1 4.2972 -0.6222 -0.0008 22 6 3.4395 1.2864 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.2170 2.3106 0.0014 27 1 1.3138 4.5122 0.0011 28 1 6.2904 4.1786 -0.5896 29 1 7.5049 2.8866 -0.4346 30 1 8.7963 5.7275 3.0791 31 1 6.6128 0.4389 -0.0121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257611890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = 11.656919 kcal Electronic energy + Delta-G solvation = -17430.863942 eV Core-core repulsion = 14511.020198 eV Total energy + Delta-G solvation = -2919.843744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.99381 -38.84793 -36.44615 -35.15681 -33.32179 -31.43619 -29.42075 -29.09145 -27.20779 -26.80139 -22.44952 -22.30814 -21.59848 -19.21574 -17.58768 -16.97680 -16.61400 -15.95065 -15.78945 -15.16481 -14.74260 -14.17725 -13.84477 -13.55027 -12.79843 -12.67555 -12.30430 -12.06621 -12.00880 -11.77584 -11.55371 -11.26404 -11.16269 -10.56624 -10.24474 -10.10337 -9.98688 -9.73203 -9.23881 -8.47132 -8.41256 -7.89533 -6.82099 -5.91795 -3.87217 1.37486 1.80222 2.86717 3.28918 3.30406 3.38480 3.45447 3.48444 3.52049 4.09299 4.54862 4.90411 5.01784 5.06226 5.24401 5.29019 5.34928 5.43293 5.64216 5.74812 5.87559 6.14687 6.33065 6.45388 6.64931 6.81120 7.04747 7.14772 7.37427 7.49355 7.66773 7.85257 7.98083 8.68385 9.15565 9.70347 11.21942 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.006431 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.271706 B = 4352.783246 C = 4938.620563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.111 3.889 4 C -0.191 4.191 5 C -0.119 4.119 6 C -0.003 4.003 7 Cl -0.051 7.051 8 C -0.066 4.066 9 C -0.099 4.099 10 C 0.044 3.956 11 C -0.492 4.492 12 H 0.071 0.929 13 C 0.070 3.930 14 N -0.905 5.905 15 Si 0.868 3.132 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.264 1.264 19 C 0.027 3.973 20 N -0.589 5.589 21 H 0.414 0.586 22 C 0.085 3.915 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.031 0.969 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -8.528 -7.878 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.065 3.935 4 C -0.211 4.211 5 C -0.139 4.139 6 C -0.030 4.030 7 Cl -0.021 7.021 8 C -0.072 4.072 9 C -0.105 4.105 10 C 0.006 3.994 11 C -0.531 4.531 12 H 0.089 0.911 13 C -0.131 4.131 14 N -0.545 5.545 15 Si 0.696 3.304 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.098 4.098 20 N -0.192 5.192 21 H 0.250 0.750 22 C -0.024 4.024 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.544 -8.603 -7.770 17.828 hybrid contribution 0.255 0.277 -0.487 0.616 sum -13.288 -8.326 -8.258 17.723 Atomic orbital electron populations 1.22977 0.78635 1.03426 1.01376 1.85996 1.21233 1.27109 1.89643 1.17863 0.88197 0.84734 1.02723 1.20582 0.99107 0.90838 1.10623 1.20423 0.92015 0.97412 1.04099 1.20254 0.91722 0.86350 1.04680 1.98387 1.81621 1.25591 1.96531 1.18729 0.93934 0.89621 1.04954 1.20741 0.91763 0.93795 1.04221 1.18283 0.90382 0.92166 0.98577 1.20887 1.18787 1.22449 0.90946 0.91093 1.24913 0.96816 0.96260 0.95064 1.69901 1.33225 1.32546 1.18805 0.86951 0.79612 0.80258 0.83613 1.20264 1.21544 1.18907 1.21648 0.87900 0.93054 1.07158 1.41560 1.04178 1.07655 1.65766 0.74989 1.17246 0.86744 0.89345 1.09064 0.92678 0.92751 0.88687 0.85067 0.85243 0.95081 0.95861 0.92938 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.33 -4.33 10.50 -19.66 -0.21 -4.53 16 3 C 0.11 1.74 6.70 -39.13 -0.26 1.48 16 4 C -0.19 -2.72 9.03 -39.39 -0.36 -3.08 16 5 C -0.12 -1.89 9.80 -39.57 -0.39 -2.28 16 6 C 0.00 -0.05 6.35 -39.18 -0.25 -0.30 16 7 Cl -0.05 -1.04 26.85 -51.86 -1.39 -2.43 16 8 C -0.07 -1.34 6.21 -105.13 -0.65 -2.00 16 9 C -0.10 -2.13 5.50 -102.71 -0.57 -2.69 16 10 C 0.04 1.06 3.95 -29.03 -0.11 0.94 16 11 C -0.49 -13.98 9.65 -34.44 -0.33 -14.31 16 12 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 15 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C 0.03 0.47 11.73 -16.75 -0.20 0.28 16 20 N -0.59 -9.34 6.08 -10.57 -0.06 -9.41 16 21 H 0.41 5.12 8.96 -40.82 -0.37 4.75 16 22 C 0.08 1.51 7.21 -83.83 -0.60 0.91 16 23 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.13 1.41 6.26 -52.49 -0.33 1.08 16 27 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.03 0.76 6.06 -51.93 -0.31 0.45 16 29 H 0.02 0.55 7.19 -51.93 -0.37 0.18 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 31 H 0.17 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -33.05 281.37 -7.18 -40.23 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.03 Total: -0.05 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.83 Total: -17.86 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.71 Total: -36.74 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.21 Total: -4.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.39 Total: -2.43 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.05 -7.18 -40.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257611890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.887 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds