Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 117.00205 * 2 1 4 4 C 1.38189 * 120.07478 * 0.02562 * 3 2 1 5 5 C 1.38810 * 120.61620 * 179.97438 * 4 3 2 6 6 C 1.37702 * 120.41176 * 0.02562 * 5 4 3 7 7 Cl 1.73609 * 120.13584 * 179.97438 * 6 5 4 8 8 C 1.39837 * 119.72912 * 359.97438 * 6 5 4 9 9 C 1.46478 * 133.95581 * 180.02562 * 8 6 5 10 10 C 1.50700 * 126.49524 * 359.97338 * 9 8 6 11 11 C 1.50702 * 109.46869 * 85.00021 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.34244 * 107.01599 * 180.24296 * 9 8 6 20 20 N 1.36785 * 109.91134 * 359.59872 * 19 9 8 21 21 H 0.97005 * 125.08231 * 180.20890 * 20 19 9 22 22 C 1.37861 * 109.84203 * 0.41487 * 20 19 9 23 23 H 1.09006 * 109.46768 * 299.99692 * 1 2 3 24 24 H 1.09000 * 109.47385 * 59.99773 * 1 2 3 25 25 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.68950 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.79387 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47210 * 325.00314 * 10 9 8 29 29 H 1.08994 * 109.47551 * 204.99967 * 10 9 8 30 30 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 31 31 H 1.08006 * 125.04286 * 179.72302 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2953 2.3715 0.0005 5 6 1.9138 3.6142 0.0011 6 6 3.2875 3.7091 0.0006 7 17 4.0536 5.2670 0.0006 8 6 4.0630 2.5454 0.0000 9 6 5.5043 2.2841 -0.0001 10 6 6.6023 3.3163 -0.0003 11 6 6.8836 3.7506 1.4152 12 1 6.3236 3.3217 2.2330 13 6 7.8603 4.6908 1.6666 14 7 8.1095 5.0658 2.9023 15 14 8.8293 5.4322 0.2521 16 1 8.1342 6.6486 -0.2402 17 1 10.1905 5.7956 0.7214 18 1 8.9335 4.4416 -0.8494 19 6 5.6619 0.9510 -0.0062 20 7 4.4394 0.3374 -0.0009 21 1 4.2972 -0.6222 -0.0008 22 6 3.4395 1.2864 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 0.2170 2.3106 0.0014 27 1 1.3138 4.5122 0.0011 28 1 6.2904 4.1786 -0.5896 29 1 7.5049 2.8866 -0.4346 30 1 8.7963 5.7275 3.0791 31 1 6.6128 0.4389 -0.0121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257611890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -10.039477 kcal Electronic energy + Delta-G solvation = -17431.804768 eV Core-core repulsion = 14511.020198 eV Total energy + Delta-G solvation = -2920.784570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.29171 -39.93877 -37.79283 -36.50177 -35.30635 -33.24496 -30.62252 -30.56506 -28.61853 -27.90755 -24.42280 -23.57774 -22.84033 -20.54082 -18.98606 -18.81903 -18.16409 -17.17224 -16.74548 -16.35508 -16.19600 -15.93913 -15.20444 -14.86528 -14.68480 -14.00591 -13.82112 -13.54919 -13.44676 -13.18543 -12.84487 -12.57973 -12.40680 -12.21169 -12.08842 -11.82769 -11.48075 -11.36956 -11.30613 -10.64214 -9.88960 -9.22015 -8.20716 -8.14179 -6.15940 0.07697 0.52048 1.39174 1.40448 1.48003 1.51664 1.85412 2.25299 2.32354 2.43525 2.76047 3.19256 3.82950 3.99744 4.05580 4.28144 4.38598 4.47221 4.52294 4.65796 4.76881 4.79561 4.95990 5.19261 5.23077 5.35834 5.41212 5.54755 5.69350 5.87807 6.04951 6.42350 6.44811 6.75308 6.88338 7.44993 9.00798 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.006431 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.271706 B = 4352.783246 C = 4938.620563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.122 3.878 4 C -0.186 4.186 5 C -0.105 4.105 6 C -0.042 4.042 7 Cl -0.078 7.078 8 C -0.093 4.093 9 C -0.160 4.160 10 C 0.054 3.946 11 C -0.483 4.483 12 H 0.022 0.978 13 C 0.011 3.989 14 N -0.955 5.955 15 Si 0.932 3.068 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.241 1.241 19 C 0.053 3.947 20 N -0.573 5.573 21 H 0.432 0.568 22 C 0.066 3.934 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.026 0.974 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 -10.219 -9.513 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.075 3.925 4 C -0.206 4.206 5 C -0.125 4.125 6 C -0.070 4.070 7 Cl -0.049 7.049 8 C -0.100 4.100 9 C -0.166 4.166 10 C 0.017 3.983 11 C -0.521 4.521 12 H 0.041 0.959 13 C -0.184 4.184 14 N -0.597 5.597 15 Si 0.756 3.244 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.164 1.164 19 C -0.074 4.074 20 N -0.177 5.177 21 H 0.272 0.728 22 C -0.042 4.042 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.139 0.861 26 H 0.191 0.809 27 H 0.171 0.829 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.427 -10.344 -9.424 20.828 hybrid contribution 0.593 0.628 0.075 0.867 sum -14.834 -9.716 -9.348 20.046 Atomic orbital electron populations 1.23391 0.75894 1.05714 1.02624 1.86002 1.23946 1.25752 1.89041 1.17966 0.87581 0.86124 1.00871 1.21020 1.01077 0.89487 1.09049 1.20794 0.90814 0.99286 1.01575 1.20519 0.93020 0.85117 1.08300 1.98359 1.82384 1.27294 1.96912 1.18947 0.93869 0.91191 1.05963 1.20596 0.91983 0.94797 1.09234 1.18017 0.91855 0.93051 0.95412 1.21027 1.17441 1.21622 0.92032 0.95943 1.25758 0.98165 0.96892 0.97621 1.70061 1.34519 1.33847 1.21307 0.85927 0.77913 0.79780 0.80786 1.20028 1.21078 1.16433 1.21960 0.89442 0.92202 1.03747 1.41504 1.03243 1.08412 1.64579 0.72846 1.17472 0.88096 0.88761 1.09891 0.91602 0.91176 0.86124 0.80889 0.82890 0.95626 0.95148 0.92912 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.63 10.50 -93.27 -0.98 -8.61 16 3 C 0.12 3.46 6.70 22.57 0.15 3.62 16 4 C -0.19 -4.68 9.03 22.40 0.20 -4.48 16 5 C -0.10 -3.14 9.80 22.28 0.22 -2.93 16 6 C -0.04 -1.64 6.35 22.53 0.14 -1.50 16 7 Cl -0.08 -3.31 26.85 -2.72 -0.07 -3.38 16 8 C -0.09 -3.83 6.21 -20.19 -0.13 -3.96 16 9 C -0.16 -6.93 5.50 -18.63 -0.10 -7.03 16 10 C 0.05 2.68 3.95 29.10 0.12 2.79 16 11 C -0.48 -28.43 9.65 25.60 0.25 -28.18 16 12 H 0.02 1.49 7.98 -2.91 -0.02 1.47 16 13 C 0.01 0.67 5.47 84.66 0.46 1.13 16 14 N -0.96 -61.48 13.96 21.45 0.30 -61.18 16 15 Si 0.93 45.52 27.47 68.60 1.88 47.41 16 16 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16 19 C 0.05 1.82 11.73 83.01 0.97 2.79 16 20 N -0.57 -17.18 6.08 -187.35 -1.14 -18.32 16 21 H 0.43 9.58 8.96 -92.70 -0.83 8.74 16 22 C 0.07 2.28 7.21 39.05 0.28 2.56 16 23 H 0.07 0.73 7.66 -2.38 -0.02 0.72 16 24 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.17 2.82 6.26 -2.91 -0.02 2.80 16 27 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.03 1.28 6.06 -2.38 -0.01 1.26 16 29 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -75.20 281.37 3.96 -71.24 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.29 Total: 6.68 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 3.68 Total: -33.83 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -0.84 Total: -79.50 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.98 Total: -8.61 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.38 kcal Total: -75.20 3.96 -71.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257611890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.202 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds