Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.41888 * 2 1 4 4 O 1.43304 * 109.39848 * 120.15337 * 2 1 3 5 5 C 1.36049 * 116.58303 * 166.76761 * 4 2 1 6 6 C 1.38504 * 120.57174 * 146.88252 * 5 4 2 7 7 C 1.38131 * 119.99545 * 180.02562 * 6 5 4 8 8 C 1.39127 * 120.16449 * 0.02562 * 7 6 5 9 9 S 1.76203 * 119.99843 * 179.97438 * 8 7 6 10 10 C 1.76203 * 99.99841 * 265.49087 * 9 8 7 11 11 H 1.08007 * 120.00222 * 5.11681 * 10 9 8 12 12 C 1.38676 * 120.00212 * 185.11337 * 10 9 8 13 13 N 1.31667 * 119.99420 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00349 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46846 * 60.00436 * 14 12 10 16 16 H 1.48503 * 109.47205 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47146 * 300.00356 * 14 12 10 18 18 C 1.39127 * 120.00759 * 359.91041 * 8 7 6 19 19 C 1.38344 * 119.75076 * 0.10934 * 18 8 7 20 20 N 1.40216 * 120.67275 * 179.97438 * 19 18 8 21 21 C 1.35083 * 118.99884 * 195.47655 * 20 19 18 22 22 O 1.21289 * 120.12663 * 181.64492 * 21 20 19 23 23 H 1.09005 * 109.47119 * 179.91456 * 1 2 3 24 24 H 1.08994 * 109.47458 * 299.91079 * 1 2 3 25 25 H 1.09002 * 109.47540 * 59.91757 * 1 2 3 26 26 H 1.08004 * 119.99674 * 0.10460 * 6 5 4 27 27 H 1.08003 * 119.91858 * 179.97438 * 7 6 5 28 28 H 0.96999 * 119.99701 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.12380 * 180.02562 * 18 8 7 30 30 H 0.97001 * 120.49797 * 15.49202 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0059 -0.6790 1.1688 5 6 3.3252 -1.0106 1.1853 6 6 4.0353 -1.0164 2.3744 7 6 5.3746 -1.3546 2.3774 8 6 6.0137 -1.6894 1.1878 9 16 7.7224 -2.1194 1.1965 10 6 8.4342 -0.5520 0.8207 11 1 7.8054 0.3231 0.7472 12 6 9.8019 -0.4418 0.6193 13 7 10.5683 -1.5087 0.7084 14 14 10.5564 1.2197 0.2202 15 1 10.2796 2.1682 1.3288 16 1 12.0242 1.0692 0.0517 17 1 9.9653 1.7425 -1.0377 18 6 5.3034 -1.6860 -0.0085 19 6 3.9622 -1.3467 -0.0097 20 7 3.2280 -1.3364 -1.2042 21 6 2.0319 -0.7093 -1.2323 22 8 1.3661 -0.7134 -2.2461 23 1 -0.3634 -1.0277 -0.0015 24 1 -0.3634 0.5124 0.8907 25 1 -0.3634 0.5151 -0.8892 26 1 3.5415 -0.7577 3.2995 27 1 5.9272 -1.3582 3.3053 28 1 11.5249 -1.4317 0.5672 29 1 5.7975 -1.9460 -0.9329 30 1 3.5737 -1.7733 -1.9983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258964247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -49.799509 kcal Electronic energy + Delta-G solvation = -17093.051898 eV Core-core repulsion = 14172.586910 eV Total energy + Delta-G solvation = -2920.464988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36844 -38.74626 -37.34367 -35.02823 -32.57153 -32.14681 -30.03511 -28.71252 -25.63002 -25.02527 -23.16213 -22.57340 -19.67771 -18.96425 -18.04716 -17.45710 -17.01507 -16.00851 -15.50478 -14.91154 -14.75985 -14.45551 -14.42315 -13.66126 -13.51006 -13.04108 -13.00492 -12.36542 -12.35147 -12.21578 -11.50218 -11.19687 -11.13954 -11.03825 -10.86607 -10.63209 -10.18292 -9.79956 -9.21695 -8.88932 -8.25549 -7.65753 -6.78957 -6.34885 -4.10072 1.21294 1.48371 2.30182 2.75098 3.07387 3.17048 3.21176 3.24163 3.43410 3.87108 3.97340 4.15387 4.60700 4.72959 4.81091 5.01471 5.31877 5.39418 5.45392 5.49075 5.60688 5.68548 5.81692 5.91665 6.09768 6.30708 6.53308 6.79023 6.83667 6.88132 7.39442 7.50732 7.75965 8.25706 9.10653 10.71330 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.004947 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.585473 B = 5658.350995 C = 5944.763076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 H 0.102 0.898 4 O -0.304 6.304 5 C 0.073 3.927 6 C -0.119 4.119 7 C -0.070 4.070 8 C -0.090 4.090 9 S -0.030 6.030 10 C -0.522 4.522 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.870 5.870 14 Si 0.921 3.079 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.274 1.274 18 C -0.081 4.081 19 C 0.073 3.927 20 N -0.655 5.655 21 C 0.493 3.507 22 O -0.520 6.520 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.271 0.729 29 H 0.137 0.863 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.427 2.271 0.866 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.017 3.983 3 H 0.119 0.881 4 O -0.219 6.219 5 C 0.027 3.973 6 C -0.139 4.139 7 C -0.092 4.092 8 C -0.201 4.201 9 S 0.205 5.795 10 C -0.670 4.670 11 H 0.094 0.906 12 C -0.135 4.135 13 N -0.505 5.505 14 Si 0.747 3.253 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.104 4.104 19 C -0.023 4.023 20 N -0.301 5.301 21 C 0.280 3.720 22 O -0.396 6.396 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.277 1.226 0.746 14.349 hybrid contribution 0.263 1.990 -1.115 2.297 sum -14.014 3.216 -0.369 14.383 Atomic orbital electron populations 1.21681 0.89263 1.04222 1.03830 1.22622 0.97796 0.96326 0.81572 0.88092 1.86307 1.21900 1.74162 1.39564 1.18588 0.82997 1.02752 0.92971 1.20539 0.93621 1.03756 0.96012 1.21647 0.92703 0.96094 0.98716 1.22672 1.03278 1.00776 0.93399 1.83639 0.87271 1.16769 1.91862 1.22801 0.94888 0.93215 1.56062 0.90613 1.24992 0.96035 0.97993 0.94475 1.69990 1.05745 1.28521 1.46291 0.86181 0.77899 0.82110 0.79157 1.19747 1.20709 1.19907 1.21323 0.89907 0.99655 0.99536 1.18111 0.92822 1.06560 0.84823 1.43714 1.19467 1.54108 1.12846 1.21510 0.80704 0.79050 0.90774 1.90754 1.55716 1.59601 1.33524 0.91165 0.90307 0.89246 0.84708 0.84257 0.91949 0.84539 0.74594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.14 37.15 0.34 -0.93 16 2 C 0.08 0.93 3.69 -27.84 -0.10 0.83 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.30 -4.26 10.11 -19.90 -0.20 -4.46 16 5 C 0.07 1.13 6.44 -39.00 -0.25 0.88 16 6 C -0.12 -1.77 9.99 -39.52 -0.39 -2.17 16 7 C -0.07 -1.20 9.79 -39.29 -0.38 -1.59 16 8 C -0.09 -1.78 5.46 -38.92 -0.21 -2.00 16 9 S -0.03 -0.72 21.40 -107.50 -2.30 -3.03 16 10 C -0.52 -14.03 9.46 30.89 0.29 -13.73 16 11 H 0.08 2.01 7.79 -52.48 -0.41 1.60 16 12 C 0.07 2.00 5.49 -17.46 -0.10 1.90 16 13 N -0.87 -24.55 13.22 55.48 0.73 -23.82 16 14 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C -0.08 -1.45 9.70 -39.21 -0.38 -1.83 16 19 C 0.07 1.17 6.54 -83.50 -0.55 0.62 16 20 N -0.65 -9.43 5.47 -9.66 -0.05 -9.49 16 21 C 0.49 7.11 7.64 -10.80 -0.08 7.03 16 22 O -0.52 -8.45 17.01 5.55 0.09 -8.35 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 26 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.41 5.30 8.89 -40.82 -0.36 4.94 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -30.26 282.88 -7.16 -37.42 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -2.85 Total: 2.82 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.82 Total: -10.97 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.68 Total: -33.30 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.11 Total: -12.81 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -2.30 Total: -3.03 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.26 -7.16 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258964247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.379 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds