Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.41888 * 2 1 4 4 O 1.43304 * 109.39848 * 120.15337 * 2 1 3 5 5 C 1.36049 * 116.58303 * 166.76761 * 4 2 1 6 6 C 1.38504 * 120.57174 * 146.88252 * 5 4 2 7 7 C 1.38131 * 119.99545 * 180.02562 * 6 5 4 8 8 C 1.39127 * 120.16449 * 0.02562 * 7 6 5 9 9 S 1.76203 * 119.99843 * 179.97438 * 8 7 6 10 10 C 1.76203 * 99.99841 * 265.49087 * 9 8 7 11 11 H 1.08007 * 120.00222 * 5.11681 * 10 9 8 12 12 C 1.38676 * 120.00212 * 185.11337 * 10 9 8 13 13 N 1.31667 * 119.99420 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00349 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46846 * 60.00436 * 14 12 10 16 16 H 1.48503 * 109.47205 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47146 * 300.00356 * 14 12 10 18 18 C 1.39127 * 120.00759 * 359.91041 * 8 7 6 19 19 C 1.38344 * 119.75076 * 0.10934 * 18 8 7 20 20 N 1.40216 * 120.67275 * 179.97438 * 19 18 8 21 21 C 1.35083 * 118.99884 * 195.47655 * 20 19 18 22 22 O 1.21289 * 120.12663 * 181.64492 * 21 20 19 23 23 H 1.09005 * 109.47119 * 179.91456 * 1 2 3 24 24 H 1.08994 * 109.47458 * 299.91079 * 1 2 3 25 25 H 1.09002 * 109.47540 * 59.91757 * 1 2 3 26 26 H 1.08004 * 119.99674 * 0.10460 * 6 5 4 27 27 H 1.08003 * 119.91858 * 179.97438 * 7 6 5 28 28 H 0.96999 * 119.99701 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.12380 * 180.02562 * 18 8 7 30 30 H 0.97001 * 120.49797 * 15.49202 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0059 -0.6790 1.1688 5 6 3.3252 -1.0106 1.1853 6 6 4.0353 -1.0164 2.3744 7 6 5.3746 -1.3546 2.3774 8 6 6.0137 -1.6894 1.1878 9 16 7.7224 -2.1194 1.1965 10 6 8.4342 -0.5520 0.8207 11 1 7.8054 0.3231 0.7472 12 6 9.8019 -0.4418 0.6193 13 7 10.5683 -1.5087 0.7084 14 14 10.5564 1.2197 0.2202 15 1 10.2796 2.1682 1.3288 16 1 12.0242 1.0692 0.0517 17 1 9.9653 1.7425 -1.0377 18 6 5.3034 -1.6860 -0.0085 19 6 3.9622 -1.3467 -0.0097 20 7 3.2280 -1.3364 -1.2042 21 6 2.0319 -0.7093 -1.2323 22 8 1.3661 -0.7134 -2.2461 23 1 -0.3634 -1.0277 -0.0015 24 1 -0.3634 0.5124 0.8907 25 1 -0.3634 0.5151 -0.8892 26 1 3.5415 -0.7577 3.2995 27 1 5.9272 -1.3582 3.3053 28 1 11.5249 -1.4317 0.5672 29 1 5.7975 -1.9460 -0.9329 30 1 3.5737 -1.7733 -1.9983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258964247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -69.456419 kcal Electronic energy + Delta-G solvation = -17093.904285 eV Core-core repulsion = 14172.586910 eV Total energy + Delta-G solvation = -2921.317376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.54366 -39.97894 -38.54862 -36.25927 -34.61120 -33.14144 -31.31820 -29.96839 -27.68708 -26.01844 -24.39156 -23.85705 -20.92540 -20.16218 -19.71570 -18.84554 -18.18221 -17.23545 -16.93790 -16.88837 -15.94349 -15.69748 -15.61908 -15.10871 -14.89853 -14.31538 -14.17995 -13.73547 -13.42800 -13.20014 -13.11618 -12.93742 -12.65982 -12.37528 -12.28502 -12.06956 -11.68190 -11.18466 -11.13733 -10.59925 -9.65348 -9.02216 -8.76092 -8.34657 -6.15263 -0.09418 0.15854 1.11492 1.33761 1.41170 1.47886 1.59767 1.68116 2.15544 2.25841 2.59889 2.84009 2.97793 3.44097 3.56946 3.71671 3.86319 4.17569 4.26011 4.33581 4.64525 4.71426 4.75494 4.87637 4.97476 5.13520 5.34793 5.42480 5.48548 5.52395 5.67226 6.19212 6.19751 6.61170 7.05464 8.70493 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.004947 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.585473 B = 5658.350995 C = 5944.763076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.073 3.927 3 H 0.122 0.878 4 O -0.300 6.300 5 C 0.080 3.920 6 C -0.104 4.104 7 C -0.072 4.072 8 C -0.111 4.111 9 S -0.079 6.079 10 C -0.537 4.537 11 H 0.070 0.930 12 C 0.023 3.977 13 N -0.906 5.906 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.269 1.269 18 C -0.088 4.088 19 C 0.077 3.923 20 N -0.654 5.654 21 C 0.490 3.510 22 O -0.540 6.540 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.171 0.829 27 H 0.146 0.854 28 H 0.273 0.727 29 H 0.131 0.869 30 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.359 3.935 1.383 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.014 3.986 3 H 0.140 0.860 4 O -0.215 6.215 5 C 0.034 3.966 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.223 4.223 9 S 0.155 5.845 10 C -0.684 4.684 11 H 0.089 0.911 12 C -0.182 4.182 13 N -0.543 5.543 14 Si 0.810 3.190 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.194 1.194 18 C -0.111 4.111 19 C -0.019 4.019 20 N -0.301 5.301 21 C 0.278 3.722 22 O -0.416 6.416 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.189 0.811 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -16.230 2.884 1.262 16.533 hybrid contribution 0.668 1.449 -1.285 2.049 sum -15.562 4.333 -0.023 16.154 Atomic orbital electron populations 1.21739 0.87013 1.04380 1.05390 1.22974 0.99427 0.96579 0.79644 0.86041 1.86327 1.20657 1.74215 1.40288 1.18753 0.83684 1.01464 0.92735 1.20777 0.92442 1.01967 0.97269 1.21693 0.93846 0.95872 0.97900 1.22367 1.00410 1.04160 0.95361 1.83558 0.91813 1.16981 1.92116 1.23070 0.95466 0.94018 1.55823 0.91133 1.25915 0.96444 1.01697 0.94171 1.70110 1.06045 1.30697 1.47425 0.85154 0.77166 0.77569 0.79119 1.18848 1.19985 1.19383 1.21156 0.90842 1.00364 0.98771 1.18016 0.92105 1.06075 0.85749 1.43760 1.19544 1.54167 1.12644 1.21997 0.80199 0.78631 0.91374 1.90749 1.56084 1.60287 1.34525 0.91732 0.87869 0.88535 0.81117 0.83647 0.91778 0.85123 0.74079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.14 71.98 0.66 -1.34 16 2 C 0.07 1.54 3.69 29.87 0.11 1.65 16 3 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 4 O -0.30 -7.32 10.11 -94.10 -0.95 -8.27 16 5 C 0.08 2.27 6.44 22.64 0.15 2.41 16 6 C -0.10 -2.80 9.99 22.31 0.22 -2.58 16 7 C -0.07 -2.38 9.79 22.46 0.22 -2.16 16 8 C -0.11 -4.44 5.46 22.70 0.12 -4.32 16 9 S -0.08 -3.99 21.40 -56.49 -1.21 -5.20 16 10 C -0.54 -29.41 9.46 67.92 0.64 -28.76 16 11 H 0.07 3.80 7.79 -2.91 -0.02 3.78 16 12 C 0.02 1.26 5.49 84.82 0.47 1.72 16 13 N -0.91 -52.20 13.22 21.63 0.29 -51.92 16 14 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 C -0.09 -3.16 9.70 22.51 0.22 -2.94 16 19 C 0.08 2.37 6.54 38.13 0.25 2.62 16 20 N -0.65 -18.01 5.47 -302.69 -1.66 -19.67 16 21 C 0.49 13.14 7.64 87.64 0.67 13.81 16 22 O -0.54 -16.62 17.01 -3.06 -0.05 -16.67 16 23 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.41 7.86 -2.39 -0.02 1.40 16 26 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 27 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.42 10.48 8.89 -92.71 -0.82 9.66 16 Total: -1.00 -65.41 282.88 2.53 -62.89 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.36 Total: 14.33 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.73 Total: -19.88 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.37 Total: -71.59 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.00 Total: -24.94 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.21 Total: -5.20 kcal Total: -65.41 2.53 -62.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258964247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.570 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds