Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.41986 * 2 1 4 4 O 1.42986 * 109.44611 * 240.07902 * 2 1 3 5 5 C 1.36054 * 116.85438 * 286.16017 * 4 2 1 6 6 C 1.38500 * 120.56571 * 146.79158 * 5 4 2 7 7 C 1.38134 * 119.99623 * 180.40955 * 6 5 4 8 8 C 1.39132 * 120.16011 * 0.24153 * 7 6 5 9 9 S 1.76202 * 119.99833 * 180.02562 * 8 7 6 10 10 C 1.76201 * 99.99777 * 85.49462 * 9 8 7 11 11 H 1.07990 * 120.00243 * 5.12088 * 10 9 8 12 12 C 1.38684 * 119.99568 * 185.11730 * 10 9 8 13 13 N 1.31659 * 119.99904 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99569 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47422 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47274 * 120.00377 * 14 12 10 17 17 H 1.48503 * 109.47341 * 240.00225 * 14 12 10 18 18 C 1.39123 * 120.00613 * 0.02562 * 8 7 6 19 19 C 1.38347 * 119.75126 * 0.02562 * 18 8 7 20 20 N 1.40217 * 120.66290 * 180.02562 * 19 18 8 21 21 C 1.35086 * 118.99217 * 195.47730 * 20 19 18 22 22 O 1.21298 * 120.12955 * 181.68628 * 21 20 19 23 23 H 1.09001 * 109.47019 * 300.09480 * 1 2 3 24 24 H 1.08998 * 109.46598 * 60.08669 * 1 2 3 25 25 H 1.08994 * 109.47354 * 180.08998 * 1 2 3 26 26 H 1.08004 * 120.00265 * 0.67638 * 6 5 4 27 27 H 1.07999 * 119.92071 * 180.27212 * 7 6 5 28 28 H 0.97006 * 119.99666 * 180.02562 * 13 12 10 29 29 H 1.08003 * 120.12301 * 180.02562 * 18 8 7 30 30 H 0.96995 * 120.50578 * 15.45631 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1686 5 6 1.8921 -2.0282 -1.1868 6 6 1.6562 -2.6992 -2.3752 7 6 1.5341 -4.0751 -2.3789 8 6 1.6426 -4.7897 -1.1900 9 16 1.4868 -6.5448 -1.1997 10 6 3.1463 -6.9971 -1.5821 11 1 3.9113 -6.2378 -1.6482 12 6 3.4699 -8.3282 -1.7980 13 7 2.5371 -9.2539 -1.7177 14 14 5.2293 -8.8078 -2.2026 15 1 6.0797 -7.5908 -2.2326 16 1 5.7387 -9.7416 -1.1663 17 1 5.2685 -9.4724 -3.5300 18 6 1.8739 -4.1186 0.0065 19 6 1.9949 -2.7404 0.0083 20 7 2.2287 -2.0447 1.2031 21 6 2.0301 -0.7089 1.2325 22 8 2.2553 -0.0820 2.2462 23 1 -0.3633 0.5153 0.8891 24 1 -0.3632 0.5125 -0.8908 25 1 -0.3634 -1.0276 0.0016 26 1 1.5720 -2.1471 -3.2996 27 1 1.3546 -4.5976 -3.3069 28 1 2.7636 -10.1850 -1.8684 29 1 1.9588 -4.6714 0.9304 30 1 2.5282 -2.5155 1.9965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258964249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = -50.407467 kcal Electronic energy + Delta-G solvation = -17180.050940 eV Core-core repulsion = 14259.559589 eV Total energy + Delta-G solvation = -2920.491351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.47202 -38.72322 -37.38457 -35.00679 -32.56816 -32.00394 -30.11139 -28.80997 -25.63427 -24.95621 -23.48053 -22.63210 -19.54191 -18.93914 -18.00295 -17.56647 -16.48115 -15.89750 -15.58732 -15.32144 -14.90733 -14.61475 -14.34238 -13.66656 -13.39440 -13.10544 -12.94761 -12.59404 -12.33493 -12.29042 -11.48221 -11.19971 -11.16138 -11.04935 -10.82662 -10.60540 -10.08467 -9.90211 -9.22716 -8.87883 -8.23951 -7.66094 -6.78963 -6.34866 -4.09799 1.21578 1.47533 2.29275 2.73640 3.13090 3.15545 3.23197 3.26739 3.42512 3.87788 3.94073 4.16164 4.59214 4.69933 4.79890 5.01758 5.22344 5.35765 5.40267 5.48354 5.58861 5.68562 5.75748 5.91225 6.09278 6.30068 6.52722 6.78931 6.83945 6.87892 7.39607 7.52057 7.74072 8.27000 9.11203 10.71447 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.004857 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.045597 B = 5763.542323 C = 5928.987224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 H 0.146 0.854 4 O -0.303 6.303 5 C 0.076 3.924 6 C -0.120 4.120 7 C -0.069 4.069 8 C -0.090 4.090 9 S -0.031 6.031 10 C -0.520 4.520 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.870 5.870 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.082 4.082 19 C 0.073 3.927 20 N -0.653 5.653 21 C 0.495 3.505 22 O -0.524 6.524 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.269 0.731 29 H 0.137 0.863 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 14.104 0.855 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.163 0.837 4 O -0.218 6.218 5 C 0.030 3.970 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.201 4.201 9 S 0.203 5.797 10 C -0.668 4.668 11 H 0.095 0.905 12 C -0.136 4.136 13 N -0.506 5.506 14 Si 0.747 3.253 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.105 4.105 19 C -0.023 4.023 20 N -0.300 5.300 21 C 0.282 3.718 22 O -0.400 6.400 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.231 13.775 1.330 14.472 hybrid contribution 2.245 0.125 0.102 2.251 sum -1.985 13.901 1.432 14.114 Atomic orbital electron populations 1.22330 0.92619 1.04184 1.04272 1.22787 0.96514 0.97346 0.81388 0.83662 1.86272 1.79337 1.16711 1.39439 1.18577 1.03764 0.81749 0.92917 1.20549 1.03043 0.94380 0.96072 1.21686 0.96685 0.92048 0.98627 1.22660 1.00543 1.03548 0.93391 1.83633 1.16701 0.87563 1.91814 1.22889 0.92799 0.95474 1.55625 0.90465 1.24997 0.98714 0.95340 0.94499 1.70009 1.32813 1.01315 1.46433 0.86069 0.82355 0.78666 0.78235 1.19480 1.20489 1.20416 1.21273 0.99475 0.90179 0.99596 1.18077 1.06891 0.92585 0.84776 1.43695 1.65523 1.07855 1.12893 1.21447 0.77365 0.82283 0.90717 1.90775 1.50261 1.65274 1.33702 0.90207 0.89718 0.91278 0.84751 0.84312 0.92071 0.84548 0.74581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.30 37.16 0.35 -1.35 16 2 C 0.08 0.92 3.81 -27.87 -0.11 0.81 16 3 H 0.15 1.35 8.14 -51.93 -0.42 0.93 16 4 O -0.30 -4.15 10.17 -19.91 -0.20 -4.35 16 5 C 0.08 1.16 5.88 -39.01 -0.23 0.93 16 6 C -0.12 -1.79 9.99 -39.52 -0.39 -2.18 16 7 C -0.07 -1.19 9.79 -39.29 -0.38 -1.58 16 8 C -0.09 -1.77 5.46 -38.92 -0.21 -1.99 16 9 S -0.03 -0.76 21.40 -107.50 -2.30 -3.06 16 10 C -0.52 -13.98 9.46 30.90 0.29 -13.69 16 11 H 0.08 2.07 7.79 -52.49 -0.41 1.66 16 12 C 0.07 1.98 5.49 -17.46 -0.10 1.88 16 13 N -0.87 -24.53 13.22 55.48 0.73 -23.80 16 14 Si 0.92 20.68 29.55 -169.99 -5.02 15.66 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.08 -1.43 9.70 -39.21 -0.38 -1.81 16 19 C 0.07 1.14 6.54 -83.51 -0.55 0.59 16 20 N -0.65 -9.16 5.47 -9.69 -0.05 -9.21 16 21 C 0.50 6.95 7.19 -10.84 -0.08 6.88 16 22 O -0.52 -8.53 17.95 5.54 0.10 -8.43 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 26 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.14 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.42 5.19 8.89 -40.82 -0.36 4.83 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -30.48 283.09 -7.12 -37.59 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.85 Total: 2.84 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.79 Total: -11.50 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.68 Total: -33.01 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.10 Total: -12.79 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.30 Total: -3.06 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.48 -7.12 -37.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258964249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.813 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds