Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.41986 * 2 1 4 4 O 1.42986 * 109.44611 * 240.07902 * 2 1 3 5 5 C 1.36054 * 116.85438 * 286.16017 * 4 2 1 6 6 C 1.38500 * 120.56571 * 146.79158 * 5 4 2 7 7 C 1.38134 * 119.99623 * 180.40955 * 6 5 4 8 8 C 1.39132 * 120.16011 * 0.24153 * 7 6 5 9 9 S 1.76202 * 119.99833 * 180.02562 * 8 7 6 10 10 C 1.76201 * 99.99777 * 85.49462 * 9 8 7 11 11 H 1.07990 * 120.00243 * 5.12088 * 10 9 8 12 12 C 1.38684 * 119.99568 * 185.11730 * 10 9 8 13 13 N 1.31659 * 119.99904 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99569 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47422 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47274 * 120.00377 * 14 12 10 17 17 H 1.48503 * 109.47341 * 240.00225 * 14 12 10 18 18 C 1.39123 * 120.00613 * 0.02562 * 8 7 6 19 19 C 1.38347 * 119.75126 * 0.02562 * 18 8 7 20 20 N 1.40217 * 120.66290 * 180.02562 * 19 18 8 21 21 C 1.35086 * 118.99217 * 195.47730 * 20 19 18 22 22 O 1.21298 * 120.12955 * 181.68628 * 21 20 19 23 23 H 1.09001 * 109.47019 * 300.09480 * 1 2 3 24 24 H 1.08998 * 109.46598 * 60.08669 * 1 2 3 25 25 H 1.08994 * 109.47354 * 180.08998 * 1 2 3 26 26 H 1.08004 * 120.00265 * 0.67638 * 6 5 4 27 27 H 1.07999 * 119.92071 * 180.27212 * 7 6 5 28 28 H 0.97006 * 119.99666 * 180.02562 * 13 12 10 29 29 H 1.08003 * 120.12301 * 180.02562 * 18 8 7 30 30 H 0.96995 * 120.50578 * 15.45631 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1686 5 6 1.8921 -2.0282 -1.1868 6 6 1.6562 -2.6992 -2.3752 7 6 1.5341 -4.0751 -2.3789 8 6 1.6426 -4.7897 -1.1900 9 16 1.4868 -6.5448 -1.1997 10 6 3.1463 -6.9971 -1.5821 11 1 3.9113 -6.2378 -1.6482 12 6 3.4699 -8.3282 -1.7980 13 7 2.5371 -9.2539 -1.7177 14 14 5.2293 -8.8078 -2.2026 15 1 6.0797 -7.5908 -2.2326 16 1 5.7387 -9.7416 -1.1663 17 1 5.2685 -9.4724 -3.5300 18 6 1.8739 -4.1186 0.0065 19 6 1.9949 -2.7404 0.0083 20 7 2.2287 -2.0447 1.2031 21 6 2.0301 -0.7089 1.2325 22 8 2.2553 -0.0820 2.2462 23 1 -0.3633 0.5153 0.8891 24 1 -0.3632 0.5125 -0.8908 25 1 -0.3634 -1.0276 0.0016 26 1 1.5720 -2.1471 -3.2996 27 1 1.3546 -4.5976 -3.3069 28 1 2.7636 -10.1850 -1.8684 29 1 1.9588 -4.6714 0.9304 30 1 2.5282 -2.5155 1.9965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258964249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = -70.401133 kcal Electronic energy + Delta-G solvation = -17180.917931 eV Core-core repulsion = 14259.559589 eV Total energy + Delta-G solvation = -2921.358341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.62286 -39.94138 -38.57982 -36.22477 -34.61061 -32.97717 -31.38782 -30.05083 -27.69113 -25.91014 -24.72062 -23.91156 -20.82759 -20.14345 -19.59451 -18.98120 -17.62382 -17.09334 -16.96304 -16.88855 -16.39913 -15.84553 -15.59295 -15.03772 -14.88421 -14.35884 -14.11789 -13.83191 -13.45616 -13.32257 -13.13805 -12.96056 -12.74280 -12.35882 -12.22474 -12.00721 -11.60950 -11.24885 -11.19633 -10.54408 -9.63778 -9.00887 -8.75965 -8.34801 -6.14995 -0.07925 0.16299 1.12965 1.34723 1.39001 1.49476 1.60046 1.73402 2.14618 2.30103 2.60275 2.84699 2.97768 3.45203 3.57475 3.73124 3.87571 4.18537 4.25426 4.33002 4.59344 4.62179 4.71582 4.84497 5.00029 5.05275 5.35681 5.43637 5.48999 5.52585 5.68860 6.20497 6.21328 6.61498 7.05792 8.70743 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.004857 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.045597 B = 5763.542323 C = 5928.987224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 H 0.176 0.824 4 O -0.300 6.300 5 C 0.085 3.915 6 C -0.107 4.107 7 C -0.073 4.073 8 C -0.111 4.111 9 S -0.079 6.079 10 C -0.535 4.535 11 H 0.069 0.931 12 C 0.023 3.977 13 N -0.906 5.906 14 Si 0.989 3.011 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.270 1.270 18 C -0.087 4.087 19 C 0.079 3.921 20 N -0.652 5.652 21 C 0.494 3.506 22 O -0.547 6.547 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.053 0.947 26 H 0.169 0.831 27 H 0.140 0.860 28 H 0.273 0.727 29 H 0.135 0.865 30 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 16.366 0.199 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.019 3.981 3 H 0.193 0.807 4 O -0.215 6.215 5 C 0.039 3.961 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.223 4.223 9 S 0.155 5.845 10 C -0.682 4.682 11 H 0.087 0.913 12 C -0.182 4.182 13 N -0.543 5.543 14 Si 0.811 3.189 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.195 1.195 18 C -0.110 4.110 19 C -0.018 4.018 20 N -0.299 5.299 21 C 0.282 3.718 22 O -0.425 6.425 23 H 0.111 0.889 24 H 0.125 0.875 25 H 0.072 0.928 26 H 0.187 0.813 27 H 0.158 0.842 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.699 16.052 0.681 16.487 hybrid contribution 2.030 -0.382 0.378 2.100 sum -1.669 15.670 1.059 15.794 Atomic orbital electron populations 1.22345 0.90786 1.03730 1.06069 1.23146 0.97907 0.97843 0.79212 0.80703 1.86287 1.79349 1.15494 1.40322 1.18710 1.02115 0.82689 0.92620 1.20754 1.01371 0.93241 0.97377 1.21681 0.96799 0.93205 0.97735 1.22342 1.04221 1.00431 0.95349 1.83534 1.16178 0.92675 1.92102 1.23124 0.93899 0.95758 1.55424 0.91255 1.25907 1.02883 0.95218 0.94222 1.70118 1.34922 1.01726 1.47501 0.85045 0.77201 0.78329 0.78307 1.19105 1.19844 1.19505 1.21145 0.99886 0.91135 0.98874 1.17975 1.06339 0.91860 0.85658 1.43737 1.65328 1.08169 1.12654 1.21956 0.76602 0.81944 0.91317 1.90771 1.51279 1.65543 1.34869 0.88938 0.87457 0.92813 0.81349 0.84209 0.91777 0.84715 0.74088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.30 71.98 0.67 -2.03 16 2 C 0.08 1.53 3.81 29.85 0.11 1.64 16 3 H 0.18 2.49 8.14 -2.39 -0.02 2.47 16 4 O -0.30 -7.13 10.17 -94.16 -0.96 -8.08 16 5 C 0.09 2.37 5.88 22.64 0.13 2.50 16 6 C -0.11 -2.91 9.99 22.31 0.22 -2.69 16 7 C -0.07 -2.46 9.79 22.46 0.22 -2.24 16 8 C -0.11 -4.45 5.46 22.70 0.12 -4.32 16 9 S -0.08 -3.99 21.40 -56.49 -1.21 -5.20 16 10 C -0.53 -29.41 9.46 67.93 0.64 -28.77 16 11 H 0.07 3.78 7.79 -2.92 -0.02 3.76 16 12 C 0.02 1.26 5.49 84.83 0.47 1.72 16 13 N -0.91 -52.12 13.22 21.63 0.29 -51.84 16 14 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 C -0.09 -3.05 9.70 22.51 0.22 -2.83 16 19 C 0.08 2.35 6.54 38.13 0.25 2.60 16 20 N -0.65 -17.39 5.47 -302.76 -1.66 -19.05 16 21 C 0.49 12.78 7.19 87.61 0.63 13.41 16 22 O -0.55 -16.79 17.95 -3.08 -0.06 -16.85 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.03 7.82 -2.39 -0.02 1.01 16 26 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 29 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.42 10.19 8.89 -92.71 -0.82 9.37 16 Total: -1.00 -66.05 283.09 2.48 -63.57 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.36 Total: 13.82 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.69 Total: -21.01 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.37 Total: -70.89 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.01 Total: -24.93 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.21 Total: -5.20 kcal Total: -66.05 2.48 -63.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258964249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.828 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds