Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99840 * 2 1 4 4 C 1.38104 * 120.06515 * 359.97438 * 3 2 1 5 5 C 1.39350 * 119.98301 * 180.02562 * 4 3 2 6 6 S 1.76177 * 131.32629 * 179.97438 * 5 4 3 7 7 C 1.75822 * 90.38064 * 180.02562 * 6 5 4 8 8 N 1.28012 * 110.44453 * 359.97438 * 7 6 5 9 9 C 1.34760 * 118.11671 * 0.02562 * 8 7 6 10 10 C 1.41123 * 128.82633 * 179.97438 * 9 8 7 11 11 C 1.36085 * 120.62610 * 180.02562 * 10 9 8 12 12 C 1.50696 * 119.63521 * 180.27804 * 11 10 9 13 13 H 1.09002 * 109.47112 * 144.72277 * 12 11 10 14 14 O 1.42903 * 109.47355 * 24.72866 * 12 11 10 15 15 C 1.50697 * 109.47486 * 264.72347 * 12 11 10 16 16 H 1.07999 * 119.99586 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00399 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99810 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99908 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47307 * 90.00176 * 19 17 15 21 21 H 1.48498 * 109.46831 * 210.00175 * 19 17 15 22 22 H 1.48498 * 109.46965 * 329.99760 * 19 17 15 23 23 H 1.09000 * 109.46894 * 59.99742 * 1 2 3 24 24 H 1.08990 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46631 * 300.00562 * 1 2 3 26 26 H 1.07995 * 120.00916 * 0.04141 * 4 3 2 27 27 H 1.08000 * 124.77872 * 179.97438 * 7 6 5 28 28 H 1.08006 * 119.68864 * 0.02562 * 10 9 8 29 29 H 0.96703 * 113.99453 * 299.99654 * 14 12 11 30 30 H 0.97006 * 119.99794 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2954 2.3705 -0.0005 5 6 1.9297 3.6112 -0.0011 6 16 1.2814 5.2493 -0.0024 7 6 2.9119 5.9072 -0.0029 8 7 3.7754 4.9622 -0.0016 9 6 3.3263 3.6916 -0.0007 10 6 4.0680 2.4910 0.0003 11 6 3.4362 1.2858 0.0007 12 6 4.2503 0.0176 0.0081 13 1 3.7378 -0.7397 0.6013 14 8 5.5348 0.2794 0.5771 15 6 4.4185 -0.4797 -1.4045 16 1 3.9801 0.0681 -2.2255 17 6 5.1320 -1.6339 -1.6487 18 7 5.2792 -2.0675 -2.8815 19 14 5.8897 -2.5817 -0.2284 20 1 4.9164 -3.5851 0.2724 21 1 7.1183 -3.2735 -0.6945 22 1 6.2370 -1.6398 0.8658 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 0.2168 2.3153 -0.0003 27 1 3.1512 6.9604 -0.0042 28 1 5.1474 2.5291 0.0008 29 1 6.0482 0.9453 0.0994 30 1 5.7815 -2.8794 -3.0534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259305455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = -20.383556 kcal Electronic energy + Delta-G solvation = -17644.396215 eV Core-core repulsion = 14725.206799 eV Total energy + Delta-G solvation = -2919.189417 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42892 -38.68264 -36.82592 -34.88513 -32.29026 -30.98516 -29.45706 -27.34689 -26.88489 -24.45840 -23.17996 -21.57480 -20.12622 -18.64009 -17.39544 -17.29609 -16.46770 -15.58419 -15.48144 -14.86349 -14.43337 -14.31704 -14.18585 -13.90481 -13.14292 -13.00713 -12.76612 -12.35545 -12.07103 -11.73611 -11.57867 -11.09182 -10.83185 -10.63618 -10.47371 -10.11560 -9.76008 -9.54506 -9.15066 -8.71057 -8.50336 -7.82231 -7.71436 -6.13542 -4.25083 0.69899 1.41780 1.45418 1.82863 2.59510 3.39419 3.48394 3.50416 3.73481 3.98859 4.17984 4.52282 4.80858 5.05604 5.18064 5.24284 5.28533 5.33089 5.53430 5.60523 5.75377 5.84886 5.89720 6.24295 6.34832 6.44781 6.84487 7.25751 7.48089 7.57831 7.78481 8.25873 8.76581 8.94366 9.48581 10.96665 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.006520 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.406803 B = 4293.438717 C = 4925.724494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.287 6.287 3 C 0.173 3.827 4 C -0.189 4.189 5 C -0.127 4.127 6 S 0.007 5.993 7 C 0.080 3.920 8 N -0.445 5.445 9 C 0.036 3.964 10 C -0.028 4.028 11 C -0.078 4.078 12 C 0.233 3.767 13 H 0.077 0.923 14 O -0.576 6.576 15 C -0.550 4.550 16 H 0.073 0.927 17 C 0.087 3.913 18 N -0.889 5.889 19 Si 0.868 3.132 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.217 1.217 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.132 0.868 27 H 0.203 0.797 28 H 0.142 0.858 29 H 0.357 0.643 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 11.481 6.779 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.198 6.198 3 C 0.124 3.876 4 C -0.213 4.213 5 C -0.245 4.245 6 S 0.257 5.743 7 C -0.227 4.227 8 N -0.155 5.155 9 C -0.082 4.082 10 C -0.048 4.048 11 C -0.082 4.082 12 C 0.176 3.824 13 H 0.095 0.905 14 O -0.383 6.383 15 C -0.587 4.587 16 H 0.091 0.909 17 C -0.118 4.118 18 N -0.526 5.526 19 Si 0.694 3.306 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.139 1.139 23 H 0.073 0.927 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.220 0.780 28 H 0.159 0.841 29 H 0.205 0.795 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.684 11.334 7.099 16.512 hybrid contribution 0.538 -0.622 -0.093 0.828 sum -9.146 10.712 7.006 15.731 Atomic orbital electron populations 1.23096 0.79055 1.04082 1.00930 1.86306 1.20635 1.25624 1.87273 1.18697 0.91753 0.83778 0.93392 1.20134 0.99492 0.89352 1.12327 1.23097 0.96432 0.96878 1.08104 1.84745 1.13681 0.98113 1.77792 1.28698 0.88870 1.02263 1.02844 1.66054 1.36840 0.99206 1.13399 1.19078 0.89598 0.90827 1.08703 1.19991 1.00225 0.87563 0.97050 1.19997 0.91257 0.97981 0.98951 1.18769 0.80109 0.88039 0.95503 0.90521 1.86759 1.30677 1.62738 1.58096 1.21258 1.36197 1.10355 0.90903 0.90883 1.24954 0.94557 0.96416 0.95885 1.69943 1.40038 1.22815 1.19801 0.87066 0.78596 0.79952 0.84979 1.21172 1.22093 1.13949 0.92676 0.88038 0.92977 0.85049 0.78019 0.84086 0.79499 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.29 -5.29 9.62 -19.61 -0.19 -5.48 16 3 C 0.17 3.30 6.65 -39.28 -0.26 3.04 16 4 C -0.19 -3.11 9.07 -39.22 -0.36 -3.46 16 5 C -0.13 -2.12 6.53 -38.55 -0.25 -2.37 16 6 S 0.01 0.09 23.39 -107.50 -2.51 -2.43 16 7 C 0.08 1.00 12.41 51.17 0.63 1.64 16 8 N -0.44 -7.31 10.56 -11.59 -0.12 -7.43 16 9 C 0.04 0.65 6.95 -84.87 -0.59 0.06 16 10 C -0.03 -0.53 9.30 -39.26 -0.37 -0.90 16 11 C -0.08 -1.64 4.97 -105.04 -0.52 -2.16 16 12 C 0.23 5.48 2.26 -29.04 -0.07 5.42 16 13 H 0.08 1.87 7.10 -51.93 -0.37 1.50 16 14 O -0.58 -12.89 9.78 -35.23 -0.34 -13.24 16 15 C -0.55 -15.18 9.33 -34.44 -0.32 -15.50 16 16 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 17 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 18 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 19 Si 0.87 21.49 26.99 -169.99 -4.59 16.91 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.22 -5.23 5.31 56.52 0.30 -4.93 16 23 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 24 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 26 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 27 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.14 2.54 6.29 -52.48 -0.33 2.21 16 29 H 0.36 7.01 7.27 45.56 0.33 7.34 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -32.99 271.31 -6.09 -39.08 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -1.99 Total: 5.20 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.20 Total: -10.58 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.65 Total: -33.55 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.53 Total: -18.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.59 Total: 16.91 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.51 Total: -2.43 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.99 -6.09 -39.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259305455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.699 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds