Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99840 * 2 1 4 4 C 1.38104 * 120.06515 * 359.97438 * 3 2 1 5 5 C 1.39350 * 119.98301 * 180.02562 * 4 3 2 6 6 S 1.76177 * 131.32629 * 179.97438 * 5 4 3 7 7 C 1.75822 * 90.38064 * 180.02562 * 6 5 4 8 8 N 1.28012 * 110.44453 * 359.97438 * 7 6 5 9 9 C 1.34760 * 118.11671 * 0.02562 * 8 7 6 10 10 C 1.41123 * 128.82633 * 179.97438 * 9 8 7 11 11 C 1.36085 * 120.62610 * 180.02562 * 10 9 8 12 12 C 1.50696 * 119.63521 * 180.27804 * 11 10 9 13 13 H 1.09002 * 109.47112 * 144.72277 * 12 11 10 14 14 O 1.42903 * 109.47355 * 24.72866 * 12 11 10 15 15 C 1.50697 * 109.47486 * 264.72347 * 12 11 10 16 16 H 1.07999 * 119.99586 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00399 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99810 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99908 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47307 * 90.00176 * 19 17 15 21 21 H 1.48498 * 109.46831 * 210.00175 * 19 17 15 22 22 H 1.48498 * 109.46965 * 329.99760 * 19 17 15 23 23 H 1.09000 * 109.46894 * 59.99742 * 1 2 3 24 24 H 1.08990 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46631 * 300.00562 * 1 2 3 26 26 H 1.07995 * 120.00916 * 0.04141 * 4 3 2 27 27 H 1.08000 * 124.77872 * 179.97438 * 7 6 5 28 28 H 1.08006 * 119.68864 * 0.02562 * 10 9 8 29 29 H 0.96703 * 113.99453 * 299.99654 * 14 12 11 30 30 H 0.97006 * 119.99794 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2954 2.3705 -0.0005 5 6 1.9297 3.6112 -0.0011 6 16 1.2814 5.2493 -0.0024 7 6 2.9119 5.9072 -0.0029 8 7 3.7754 4.9622 -0.0016 9 6 3.3263 3.6916 -0.0007 10 6 4.0680 2.4910 0.0003 11 6 3.4362 1.2858 0.0007 12 6 4.2503 0.0176 0.0081 13 1 3.7378 -0.7397 0.6013 14 8 5.5348 0.2794 0.5771 15 6 4.4185 -0.4797 -1.4045 16 1 3.9801 0.0681 -2.2255 17 6 5.1320 -1.6339 -1.6487 18 7 5.2792 -2.0675 -2.8815 19 14 5.8897 -2.5817 -0.2284 20 1 4.9164 -3.5851 0.2724 21 1 7.1183 -3.2735 -0.6945 22 1 6.2370 -1.6398 0.8658 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 0.2168 2.3153 -0.0003 27 1 3.1512 6.9604 -0.0042 28 1 5.1474 2.5291 0.0008 29 1 6.0482 0.9453 0.0994 30 1 5.7815 -2.8794 -3.0534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259305455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = -45.576730 kcal Electronic energy + Delta-G solvation = -17645.488673 eV Core-core repulsion = 14725.206799 eV Total energy + Delta-G solvation = -2920.281875 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73355 -39.91137 -38.46731 -36.30804 -34.45578 -32.43822 -30.78316 -29.05087 -28.10354 -25.74474 -24.80126 -22.96738 -21.60435 -19.96730 -19.35683 -18.51433 -17.78131 -17.08159 -16.87144 -16.69597 -15.80276 -15.50990 -15.47017 -15.38790 -14.88815 -14.57605 -14.13592 -13.79334 -13.70227 -13.30123 -12.96095 -12.65577 -12.59409 -12.27095 -11.70442 -11.68791 -11.37010 -10.94404 -10.81233 -10.65376 -10.38319 -9.14623 -8.96726 -8.34429 -6.49196 -0.49814 0.07246 0.29984 0.70528 1.37561 1.41425 1.45627 1.75061 2.32585 2.44222 2.62153 3.00910 3.08200 3.55764 3.77881 4.02198 4.11221 4.26146 4.33975 4.37956 4.47767 4.56894 4.72178 4.84418 4.89605 5.07141 5.37778 5.45686 5.56642 6.07772 6.35949 6.59603 6.63123 7.06735 7.29362 8.79685 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.006520 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.406803 B = 4293.438717 C = 4925.724494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.153 3.847 4 C -0.177 4.177 5 C -0.153 4.153 6 S 0.071 5.929 7 C 0.102 3.898 8 N -0.484 5.484 9 C 0.023 3.977 10 C -0.040 4.040 11 C -0.109 4.109 12 C 0.246 3.754 13 H 0.067 0.933 14 O -0.577 6.577 15 C -0.545 4.545 16 H 0.030 0.970 17 C 0.032 3.968 18 N -0.937 5.937 19 Si 0.935 3.065 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.206 1.206 23 H 0.064 0.936 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.162 0.838 27 H 0.253 0.747 28 H 0.141 0.859 29 H 0.369 0.631 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 13.720 8.277 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.103 3.897 4 C -0.201 4.201 5 C -0.271 4.271 6 S 0.322 5.678 7 C -0.204 4.204 8 N -0.195 5.195 9 C -0.095 4.095 10 C -0.061 4.061 11 C -0.112 4.112 12 C 0.188 3.812 13 H 0.085 0.915 14 O -0.385 6.385 15 C -0.583 4.583 16 H 0.048 0.952 17 C -0.167 4.167 18 N -0.576 5.576 19 Si 0.759 3.241 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.128 1.128 23 H 0.082 0.918 24 H 0.136 0.864 25 H 0.094 0.906 26 H 0.180 0.820 27 H 0.269 0.731 28 H 0.159 0.841 29 H 0.218 0.782 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.044 13.592 8.603 19.512 hybrid contribution 0.816 -1.052 -0.605 1.462 sum -10.228 12.540 7.998 18.051 Atomic orbital electron populations 1.23445 0.76326 1.05817 1.02496 1.86242 1.23632 1.25914 1.87525 1.18762 0.91432 0.84919 0.94575 1.20379 1.00762 0.88490 1.10432 1.23545 0.96627 0.99309 1.07653 1.84563 1.12584 0.94265 1.76398 1.29695 0.88573 1.03704 0.98445 1.66108 1.38129 0.98944 1.16329 1.19181 0.90329 0.91322 1.08672 1.20022 1.00461 0.88083 0.97490 1.19781 0.92330 0.97115 1.01978 1.18355 0.80781 0.89550 0.92505 0.91508 1.86662 1.30508 1.63378 1.57944 1.21438 1.34972 1.09717 0.92149 0.95205 1.25808 0.95228 0.97511 0.98191 1.70070 1.41783 1.23778 1.21958 0.86033 0.77552 0.78563 0.81962 1.20839 1.22010 1.12757 0.91760 0.86417 0.90567 0.82011 0.73141 0.84123 0.78173 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.81 113.37 1.11 1.43 16 2 O -0.32 -11.97 9.62 -93.08 -0.89 -12.87 16 3 C 0.15 5.86 6.65 22.47 0.15 6.01 16 4 C -0.18 -5.58 9.07 22.51 0.20 -5.37 16 5 C -0.15 -4.82 6.53 22.94 0.15 -4.67 16 6 S 0.07 1.54 23.39 -56.49 -1.32 0.22 16 7 C 0.10 2.14 12.41 130.80 1.62 3.76 16 8 N -0.48 -14.89 10.56 -190.48 -2.01 -16.90 16 9 C 0.02 0.80 6.95 39.80 0.28 1.08 16 10 C -0.04 -1.58 9.30 22.48 0.21 -1.37 16 11 C -0.11 -4.66 4.97 -20.14 -0.10 -4.76 16 12 C 0.25 11.89 2.26 29.10 0.07 11.95 16 13 H 0.07 3.34 7.10 -2.39 -0.02 3.32 16 14 O -0.58 -26.00 9.78 -148.98 -1.46 -27.45 16 15 C -0.55 -31.40 9.33 25.60 0.24 -31.16 16 16 H 0.03 1.93 7.98 -2.91 -0.02 1.90 16 17 C 0.03 1.90 5.47 84.65 0.46 2.37 16 18 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 19 Si 0.94 45.43 26.99 68.60 1.85 47.28 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.21 -9.53 5.31 99.48 0.53 -9.00 16 23 H 0.06 1.38 7.66 -2.39 -0.02 1.37 16 24 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 26 H 0.16 3.91 6.28 -2.91 -0.02 3.89 16 27 H 0.25 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.14 5.25 6.29 -2.91 -0.02 5.23 16 29 H 0.37 14.73 7.27 -74.06 -0.54 14.19 16 30 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -74.31 271.31 1.34 -72.98 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.48 Total: 15.88 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.39 Total: -20.73 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -1.71 Total: -75.30 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -2.35 Total: -40.32 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.85 Total: 47.28 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -74.31 1.34 -72.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259305455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.400 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds