Wall clock time and date at job start Mon Mar 30 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35952 * 116.99637 * 2 1 4 4 C 1.38114 * 120.07313 * 0.25808 * 3 2 1 5 5 C 1.39339 * 119.98383 * 180.31385 * 4 3 2 6 6 S 1.76188 * 131.31803 * 179.70637 * 5 4 3 7 7 C 1.75824 * 90.37453 * 179.97438 * 6 5 4 8 8 N 1.28012 * 110.45073 * 359.97438 * 7 6 5 9 9 C 1.34766 * 118.11041 * 359.97438 * 8 7 6 10 10 C 1.41132 * 128.82334 * 180.02562 * 9 8 7 11 11 C 1.36084 * 120.62450 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.63418 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46875 * 214.99360 * 12 11 10 14 14 O 1.42898 * 109.46994 * 334.99472 * 12 11 10 15 15 C 1.50694 * 109.47166 * 94.99568 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 12 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.09004 * 109.46466 * 60.00127 * 1 2 3 24 24 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47463 * 300.00460 * 1 2 3 26 26 H 1.08003 * 120.00153 * 359.96869 * 4 3 2 27 27 H 1.08002 * 124.77591 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.68553 * 359.97438 * 10 9 8 29 29 H 0.96698 * 114.00284 * 60.00294 * 14 12 11 30 30 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2954 2.3706 0.0054 5 6 1.9298 3.6112 -0.0012 6 16 1.2812 5.2494 -0.0040 7 6 2.9118 5.9072 -0.0119 8 7 3.7753 4.9622 -0.0116 9 6 3.3262 3.6916 -0.0050 10 6 4.0680 2.4910 -0.0028 11 6 3.4362 1.2857 0.0036 12 6 4.2503 0.0176 0.0053 13 1 3.7362 -0.7450 -0.5796 14 8 5.5332 0.2744 -0.5694 15 6 4.4224 -0.4669 1.4218 16 1 3.9863 0.0880 2.2392 17 6 5.1367 -1.6190 1.6744 18 7 5.6683 -2.2946 0.6791 19 14 5.3565 -2.2155 3.4309 20 1 4.2392 -3.1262 3.7878 21 1 6.6455 -2.9434 3.5488 22 1 5.3596 -1.0509 4.3524 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2168 2.3154 0.0091 27 1 3.1511 6.9604 -0.0165 28 1 5.1473 2.5291 -0.0070 29 1 6.0479 0.9445 -0.0992 30 1 6.1705 -3.1052 0.8568 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259305461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:59 Heat of formation + Delta-G solvation = -26.350441 kcal Electronic energy + Delta-G solvation = -17595.131649 eV Core-core repulsion = 14675.683489 eV Total energy + Delta-G solvation = -2919.448160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34408 -38.62071 -36.54649 -34.68123 -32.18692 -30.82284 -29.35381 -27.14311 -26.60759 -24.40033 -23.30316 -21.55170 -20.11973 -18.52521 -17.25247 -17.03319 -16.39028 -15.47078 -15.44062 -14.62586 -14.38892 -14.26025 -14.21811 -13.80862 -13.07812 -12.96391 -12.53772 -12.15183 -11.94931 -11.55230 -11.22657 -11.00054 -10.92325 -10.60903 -10.45884 -10.23457 -9.73043 -9.50427 -9.25670 -8.65261 -8.41842 -7.75669 -7.65393 -6.02960 -4.21217 0.75366 1.46699 1.53388 1.87404 2.65455 3.27728 3.34596 3.38026 3.57193 4.05651 4.23212 4.40517 4.87165 5.12989 5.22980 5.31058 5.32029 5.37684 5.59831 5.64252 5.86961 5.97906 6.21571 6.34453 6.49068 6.61054 6.98021 7.61110 7.68633 7.80333 7.85511 8.08133 8.79069 9.26668 9.52850 11.00712 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.006320 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.043486 B = 4429.132546 C = 4948.378164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.285 6.285 3 C 0.172 3.828 4 C -0.190 4.190 5 C -0.128 4.128 6 S 0.002 5.998 7 C 0.079 3.921 8 N -0.445 5.445 9 C 0.035 3.965 10 C -0.031 4.031 11 C -0.084 4.084 12 C 0.267 3.733 13 H 0.080 0.920 14 O -0.559 6.559 15 C -0.557 4.557 16 H 0.056 0.944 17 C 0.081 3.919 18 N -0.858 5.858 19 Si 0.892 3.108 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.051 0.949 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.130 0.870 27 H 0.203 0.797 28 H 0.141 0.859 29 H 0.346 0.654 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 11.310 -1.381 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.196 6.196 3 C 0.123 3.877 4 C -0.215 4.215 5 C -0.247 4.247 6 S 0.252 5.748 7 C -0.228 4.228 8 N -0.155 5.155 9 C -0.082 4.082 10 C -0.052 4.052 11 C -0.088 4.088 12 C 0.210 3.790 13 H 0.097 0.903 14 O -0.362 6.362 15 C -0.595 4.595 16 H 0.075 0.925 17 C -0.125 4.125 18 N -0.494 5.494 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.219 0.781 28 H 0.158 0.842 29 H 0.192 0.808 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.390 11.110 -1.875 15.326 hybrid contribution 0.318 -0.371 1.467 1.546 sum -10.072 10.739 -0.407 14.729 Atomic orbital electron populations 1.23085 0.79297 1.03976 1.00830 1.86334 1.20392 1.25618 1.87270 1.18747 0.91857 0.83667 0.93477 1.20138 0.99398 0.89422 1.12543 1.23062 0.96400 0.96765 1.08441 1.84716 1.13772 0.98309 1.78003 1.28679 0.88855 1.02229 1.03039 1.66059 1.36834 0.99262 1.13317 1.19115 0.89628 0.90811 1.08683 1.20032 1.00246 0.87551 0.97389 1.20502 0.91500 0.98876 0.97905 1.18421 0.79800 0.86016 0.94772 0.90276 1.86645 1.30642 1.62341 1.56606 1.21418 1.36239 1.10028 0.91830 0.92544 1.25010 0.94632 0.95897 0.96984 1.70070 1.32745 1.15907 1.30634 0.86621 0.77601 0.78985 0.84906 1.20478 1.21025 1.19789 0.93016 0.88111 0.92847 0.85196 0.78096 0.84161 0.80848 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.28 -5.40 9.61 -19.59 -0.19 -5.59 16 3 C 0.17 3.37 6.65 -39.27 -0.26 3.11 16 4 C -0.19 -3.22 9.07 -39.22 -0.36 -3.58 16 5 C -0.13 -2.20 6.53 -38.56 -0.25 -2.46 16 6 S 0.00 0.03 23.39 -107.50 -2.51 -2.48 16 7 C 0.08 1.01 12.41 51.17 0.63 1.65 16 8 N -0.44 -7.50 10.56 -11.58 -0.12 -7.62 16 9 C 0.04 0.66 6.95 -84.87 -0.59 0.07 16 10 C -0.03 -0.63 9.31 -39.26 -0.37 -1.00 16 11 C -0.08 -1.83 4.97 -105.04 -0.52 -2.36 16 12 C 0.27 6.79 2.78 -29.04 -0.08 6.71 16 13 H 0.08 2.21 7.66 -51.93 -0.40 1.81 16 14 O -0.56 -14.23 12.37 -35.23 -0.44 -14.67 16 15 C -0.56 -15.20 8.75 -34.44 -0.30 -15.50 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.61 7.65 -51.93 -0.40 0.22 16 26 H 0.13 1.80 6.28 -52.48 -0.33 1.47 16 27 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.14 2.68 6.29 -52.49 -0.33 2.35 16 29 H 0.35 7.73 7.27 45.56 0.33 8.06 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 277.30 15.07 4.18 4.18 Total: -1.00 -32.18 277.30 -6.50 -38.68 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -1.91 Total: 5.57 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.20 Total: -9.90 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.59 Total: -31.89 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.62 Total: -20.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.51 Total: -2.48 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.18 -6.50 -38.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259305461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.328 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds