Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35952 * 116.99637 * 2 1 4 4 C 1.38114 * 120.07313 * 0.25808 * 3 2 1 5 5 C 1.39339 * 119.98383 * 180.31385 * 4 3 2 6 6 S 1.76188 * 131.31803 * 179.70637 * 5 4 3 7 7 C 1.75824 * 90.37453 * 179.97438 * 6 5 4 8 8 N 1.28012 * 110.45073 * 359.97438 * 7 6 5 9 9 C 1.34766 * 118.11041 * 359.97438 * 8 7 6 10 10 C 1.41132 * 128.82334 * 180.02562 * 9 8 7 11 11 C 1.36084 * 120.62450 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.63418 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46875 * 214.99360 * 12 11 10 14 14 O 1.42898 * 109.46994 * 334.99472 * 12 11 10 15 15 C 1.50694 * 109.47166 * 94.99568 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 12 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.09004 * 109.46466 * 60.00127 * 1 2 3 24 24 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47463 * 300.00460 * 1 2 3 26 26 H 1.08003 * 120.00153 * 359.96869 * 4 3 2 27 27 H 1.08002 * 124.77591 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.68553 * 359.97438 * 10 9 8 29 29 H 0.96698 * 114.00284 * 60.00294 * 14 12 11 30 30 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2954 2.3706 0.0054 5 6 1.9298 3.6112 -0.0012 6 16 1.2812 5.2494 -0.0040 7 6 2.9118 5.9072 -0.0119 8 7 3.7753 4.9622 -0.0116 9 6 3.3262 3.6916 -0.0050 10 6 4.0680 2.4910 -0.0028 11 6 3.4362 1.2857 0.0036 12 6 4.2503 0.0176 0.0053 13 1 3.7362 -0.7450 -0.5796 14 8 5.5332 0.2744 -0.5694 15 6 4.4224 -0.4669 1.4218 16 1 3.9863 0.0880 2.2392 17 6 5.1367 -1.6190 1.6744 18 7 5.6683 -2.2946 0.6791 19 14 5.3565 -2.2155 3.4309 20 1 4.2392 -3.1262 3.7878 21 1 6.6455 -2.9434 3.5488 22 1 5.3596 -1.0509 4.3524 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2168 2.3154 0.0091 27 1 3.1511 6.9604 -0.0165 28 1 5.1473 2.5291 -0.0070 29 1 6.0479 0.9445 -0.0992 30 1 6.1705 -3.1052 0.8568 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259305461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = -50.460598 kcal Electronic energy + Delta-G solvation = -17596.177144 eV Core-core repulsion = 14675.683489 eV Total energy + Delta-G solvation = -2920.493655 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69528 -39.89041 -38.26076 -36.22278 -34.30725 -32.34713 -30.70450 -28.70927 -28.05200 -25.76440 -24.95605 -22.98407 -21.61513 -19.84115 -19.09169 -18.49249 -17.73351 -17.00226 -16.70153 -16.68873 -15.88018 -15.50249 -15.45475 -15.24221 -14.90701 -14.24620 -14.09003 -13.64270 -13.47240 -13.18653 -12.82830 -12.76330 -12.61771 -12.13407 -11.96337 -11.66917 -11.35552 -10.97071 -10.70444 -10.64026 -10.38591 -9.14026 -8.95160 -8.13161 -6.39508 -0.48288 0.10194 0.31397 0.71498 1.38010 1.40042 1.41242 1.51480 2.36116 2.37780 2.66610 3.08089 3.12264 3.57477 3.85085 4.13867 4.23240 4.32297 4.36285 4.38888 4.51944 4.60901 4.73194 4.92525 4.97481 5.11611 5.49203 5.61733 5.75127 6.01539 6.40012 6.63802 6.68305 7.27642 7.44504 8.90256 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.006320 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.043486 B = 4429.132546 C = 4948.378164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.152 3.848 4 C -0.175 4.175 5 C -0.154 4.154 6 S 0.072 5.928 7 C 0.102 3.898 8 N -0.485 5.485 9 C 0.024 3.976 10 C -0.044 4.044 11 C -0.111 4.111 12 C 0.274 3.726 13 H 0.040 0.960 14 O -0.575 6.575 15 C -0.565 4.565 16 H 0.050 0.950 17 C 0.030 3.970 18 N -0.897 5.897 19 Si 0.960 3.040 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.268 1.268 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.068 0.932 26 H 0.163 0.837 27 H 0.253 0.747 28 H 0.135 0.865 29 H 0.357 0.643 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 13.903 -0.463 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.103 3.897 4 C -0.199 4.199 5 C -0.272 4.272 6 S 0.323 5.677 7 C -0.204 4.204 8 N -0.196 5.196 9 C -0.093 4.093 10 C -0.064 4.064 11 C -0.115 4.115 12 C 0.217 3.783 13 H 0.058 0.942 14 O -0.380 6.380 15 C -0.603 4.603 16 H 0.068 0.932 17 C -0.173 4.173 18 N -0.534 5.534 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.087 0.913 26 H 0.181 0.819 27 H 0.269 0.731 28 H 0.153 0.847 29 H 0.204 0.796 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.332 13.716 -0.953 18.470 hybrid contribution 0.799 -0.944 1.124 1.671 sum -11.534 12.772 0.171 17.210 Atomic orbital electron populations 1.23444 0.76403 1.05736 1.02520 1.86279 1.23558 1.25960 1.87524 1.18764 0.91346 0.84896 0.94736 1.20374 1.00707 0.88414 1.10428 1.23518 0.96526 0.99324 1.07864 1.84522 1.12506 0.94187 1.76513 1.29695 0.88606 1.03675 0.98458 1.66110 1.38186 0.98959 1.16363 1.19161 0.90366 0.91213 1.08603 1.19980 1.00209 0.88185 0.98070 1.20115 0.92630 0.97570 1.01168 1.18001 0.79846 0.87402 0.93072 0.94210 1.86558 1.31343 1.63034 1.57049 1.21660 1.35853 1.10105 0.92679 0.93182 1.25847 0.94286 0.96004 1.01144 1.70199 1.33817 1.16494 1.32892 0.85561 0.77775 0.78504 0.79770 1.19668 1.20439 1.19268 0.90938 0.86534 0.91310 0.81931 0.73135 0.84745 0.79637 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -12.50 9.61 -93.01 -0.89 -13.39 16 3 C 0.15 6.07 6.65 22.47 0.15 6.22 16 4 C -0.18 -5.67 9.07 22.51 0.20 -5.46 16 5 C -0.15 -4.96 6.53 22.93 0.15 -4.81 16 6 S 0.07 1.58 23.39 -56.49 -1.32 0.26 16 7 C 0.10 2.19 12.41 130.80 1.62 3.81 16 8 N -0.49 -15.34 10.56 -190.47 -2.01 -17.36 16 9 C 0.02 0.88 6.95 39.80 0.28 1.16 16 10 C -0.04 -1.82 9.31 22.48 0.21 -1.62 16 11 C -0.11 -5.08 4.97 -20.13 -0.10 -5.18 16 12 C 0.27 14.82 2.78 29.10 0.08 14.90 16 13 H 0.04 2.42 7.66 -2.39 -0.02 2.40 16 14 O -0.57 -31.11 12.37 -148.98 -1.84 -32.95 16 15 C -0.57 -32.13 8.75 25.60 0.22 -31.91 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 17 C 0.03 1.70 5.40 84.66 0.46 2.15 16 18 N -0.90 -54.17 12.84 21.45 0.28 -53.90 16 19 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H 0.07 1.45 7.67 -2.38 -0.02 1.43 16 24 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.07 1.45 7.65 -2.38 -0.02 1.43 16 26 H 0.16 4.00 6.28 -2.91 -0.02 3.98 16 27 H 0.25 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.13 5.47 6.29 -2.91 -0.02 5.45 16 29 H 0.36 17.05 7.27 -74.06 -0.54 16.51 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.02 277.30 1.28 -71.74 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.66 Total: 18.65 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.39 Total: -19.29 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.74 Total: -71.25 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.74 Total: -46.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -73.02 1.28 -71.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259305461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.280 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds