Wall clock time and date at job start Mon Mar 30 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36820 * 125.06791 * 2 1 4 4 C 1.34236 * 109.93195 * 179.97438 * 3 2 1 5 5 C 1.46486 * 107.00409 * 0.02562 * 4 3 2 6 6 C 1.39645 * 134.01332 * 179.97438 * 5 4 3 7 7 C 1.36721 * 119.75138 * 179.97438 * 6 5 4 8 8 Cl 1.73598 * 119.74891 * 179.97438 * 7 6 5 9 9 C 1.38928 * 120.50023 * 359.97438 * 7 6 5 10 10 C 1.50700 * 119.67202 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47454 * 325.00241 * 10 9 7 12 12 O 1.42903 * 109.47048 * 205.00190 * 10 9 7 13 13 C 1.50699 * 109.47070 * 85.00022 * 10 9 7 14 14 H 1.08005 * 119.99962 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99948 * 179.97438 * 13 10 9 16 16 N 1.31504 * 120.00008 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99737 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.46989 * 60.00146 * 17 15 13 19 19 H 1.48496 * 109.47163 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47213 * 299.99930 * 17 15 13 21 21 C 1.37742 * 120.65791 * 0.02562 * 9 7 6 22 22 C 1.37736 * 125.06475 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47517 * 270.02363 * 1 2 3 24 24 H 1.09006 * 109.46926 * 30.02190 * 1 2 3 25 25 H 1.09004 * 109.47164 * 150.02150 * 1 2 3 26 26 H 1.08004 * 125.03562 * 0.02562 * 3 2 1 27 27 H 1.08001 * 126.49938 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.12295 * 359.71991 * 6 5 4 29 29 H 0.96700 * 113.99911 * 299.99564 * 12 10 9 30 30 H 0.97004 * 119.99954 * 179.97438 * 16 15 13 31 31 H 1.07998 * 120.10677 * 179.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1198 0.0000 4 6 3.5469 0.7693 0.0006 5 6 3.5947 -0.6947 0.0003 6 6 4.6301 -1.6318 0.0002 7 6 4.3366 -2.9671 0.0005 8 17 5.6238 -4.1319 -0.0003 9 6 3.0161 -3.3989 0.0015 10 6 2.7140 -4.8753 0.0012 11 1 3.4654 -5.3999 -0.5890 12 8 1.4218 -5.0969 -0.5672 13 6 2.7358 -5.3927 1.4164 14 1 2.9469 -4.7197 2.2343 15 6 2.4852 -6.7252 1.6672 16 7 2.2277 -7.5446 0.6714 17 14 2.5115 -7.3664 3.4215 18 1 1.4878 -6.6513 4.2253 19 1 2.2127 -8.8210 3.4214 20 1 3.8543 -7.1364 4.0125 21 6 1.9803 -2.4910 0.0016 22 6 2.2563 -1.1274 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8836 2.1354 0.0004 27 1 4.3937 1.4397 0.0011 28 1 5.6587 -1.3029 -0.0043 29 1 0.7026 -4.6586 -0.0920 30 1 2.0518 -8.4821 0.8478 31 1 0.9571 -2.8365 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259313705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:26 Heat of formation + Delta-G solvation = -14.937714 kcal Electronic energy + Delta-G solvation = -17535.146826 eV Core-core repulsion = 14614.149853 eV Total energy + Delta-G solvation = -2920.996973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.19201 -39.16114 -37.33550 -36.43376 -34.28776 -33.63561 -31.08324 -30.83995 -28.09886 -27.01607 -24.98957 -23.15464 -21.85043 -20.95994 -19.09474 -18.15335 -17.39278 -17.16566 -16.66373 -16.18327 -15.74436 -15.36074 -14.98837 -14.61270 -14.25527 -14.11203 -13.77021 -13.29825 -13.22201 -13.11580 -13.00117 -12.85796 -12.78602 -12.15719 -12.12498 -11.77722 -11.49205 -11.06605 -10.73861 -10.48919 -10.32357 -8.93871 -8.49794 -8.08997 -6.35250 0.17041 0.53638 1.39564 1.41647 1.42764 1.49525 1.86268 1.99892 2.40138 2.86142 3.13843 3.74164 3.93787 4.00072 4.12958 4.20028 4.48624 4.51907 4.56685 4.71032 4.71629 4.76547 4.99927 5.11737 5.20088 5.38218 5.66206 5.68965 5.81840 5.88063 6.05596 6.24050 6.50067 6.71810 7.31537 7.48543 8.92836 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.006890 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.242303 B = 4063.056810 C = 4730.290156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.490 5.490 3 C 0.063 3.937 4 C -0.218 4.218 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.066 4.066 8 Cl -0.081 7.081 9 C -0.077 4.077 10 C 0.266 3.734 11 H 0.045 0.955 12 O -0.574 6.574 13 C -0.557 4.557 14 H 0.049 0.951 15 C 0.032 3.968 16 N -0.897 5.897 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.273 1.273 21 C -0.124 4.124 22 C 0.085 3.915 23 H 0.077 0.923 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.215 0.785 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.355 0.645 30 H 0.262 0.738 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 18.567 -0.614 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.173 5.173 3 C -0.062 4.062 4 C -0.243 4.243 5 C -0.138 4.138 6 C -0.089 4.089 7 C -0.094 4.094 8 Cl -0.052 7.052 9 C -0.079 4.079 10 C 0.209 3.791 11 H 0.062 0.938 12 O -0.379 6.379 13 C -0.595 4.595 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.534 5.534 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.198 1.198 21 C -0.145 4.145 22 C -0.022 4.022 23 H 0.096 0.904 24 H 0.134 0.866 25 H 0.094 0.906 26 H 0.232 0.768 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.201 0.799 30 H 0.071 0.929 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.818 17.968 -1.106 18.094 hybrid contribution -0.016 -0.836 1.187 1.452 sum -1.834 17.132 0.081 17.230 Atomic orbital electron populations 1.22225 0.75111 1.05599 1.04045 1.44146 1.07256 1.03547 1.62349 1.22510 0.89772 0.92188 1.01745 1.21929 0.97761 0.90796 1.13777 1.19409 0.91430 0.95288 1.07686 1.20204 0.99852 0.89173 0.99655 1.20243 0.88601 0.90277 1.10247 1.98311 1.49456 1.60264 1.97190 1.20609 0.91749 0.98502 0.97088 1.18225 0.82438 0.85237 0.93214 0.93782 1.86567 1.17382 1.77068 1.56863 1.21567 1.50883 0.94369 0.92687 0.93299 1.25769 0.93619 0.96939 1.00689 1.70183 1.46005 1.04505 1.32718 0.85724 0.78878 0.77317 0.80386 1.19188 1.20617 1.19773 1.19635 0.99057 0.89024 1.06738 1.18325 0.91198 0.88460 1.04186 0.90441 0.86604 0.90571 0.76835 0.81312 0.83612 0.79891 0.92866 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 11.03 127.77 1.41 2.52 16 2 N -0.49 -11.79 3.18 -539.24 -1.71 -13.51 16 3 C 0.06 1.19 11.29 83.00 0.94 2.13 16 4 C -0.22 -5.16 11.08 23.51 0.26 -4.90 16 5 C -0.13 -4.38 6.37 -20.20 -0.13 -4.51 16 6 C -0.07 -2.48 9.81 22.25 0.22 -2.26 16 7 C -0.07 -2.79 6.27 22.08 0.14 -2.66 16 8 Cl -0.08 -3.43 27.33 -2.72 -0.07 -3.50 16 9 C -0.08 -3.52 5.01 -19.82 -0.10 -3.62 16 10 C 0.27 14.25 2.56 29.10 0.07 14.32 16 11 H 0.04 2.65 7.09 -2.39 -0.02 2.63 16 12 O -0.57 -30.51 12.37 -148.98 -1.84 -32.35 16 13 C -0.56 -31.42 8.75 25.60 0.22 -31.19 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 15 C 0.03 1.84 5.40 84.66 0.46 2.30 16 16 N -0.90 -54.09 12.84 21.45 0.28 -53.81 16 17 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 C -0.12 -4.86 9.21 22.37 0.21 -4.65 16 22 C 0.09 2.87 6.81 39.02 0.27 3.13 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 26 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 29 H 0.36 16.37 7.29 -74.06 -0.54 15.83 16 30 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 31 H 0.13 4.67 6.37 -2.91 -0.02 4.65 16 Total: -1.00 -71.96 285.49 3.26 -68.71 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.62 Total: 17.42 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.96 Total: -29.38 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.44 Total: -67.32 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.84 Total: -32.35 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.50 kcal Total: -71.96 3.26 -68.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259313705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.769 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds