Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36824 * 125.07092 * 2 1 4 4 C 1.34234 * 109.93295 * 179.97438 * 3 2 1 5 5 C 1.46484 * 107.00813 * 359.97438 * 4 3 2 6 6 C 1.39645 * 134.01984 * 179.97438 * 5 4 3 7 7 C 1.36712 * 119.75628 * 179.75554 * 6 5 4 8 8 Cl 1.73599 * 119.75076 * 180.27455 * 7 6 5 9 9 C 1.38936 * 120.50072 * 0.56361 * 7 6 5 10 10 C 1.50698 * 119.67521 * 179.73160 * 9 7 6 11 11 H 1.09001 * 109.46875 * 34.72454 * 10 9 7 12 12 O 1.42895 * 109.47114 * 154.72425 * 10 9 7 13 13 C 1.50697 * 109.46993 * 274.72775 * 10 9 7 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.37742 * 120.65081 * 359.45821 * 9 7 6 22 22 C 1.37739 * 125.06680 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47048 * 270.02631 * 1 2 3 24 24 H 1.08998 * 109.46766 * 30.02882 * 1 2 3 25 25 H 1.08999 * 109.47215 * 150.02293 * 1 2 3 26 26 H 1.08000 * 125.03198 * 359.95471 * 3 2 1 27 27 H 1.08001 * 126.49775 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.11744 * 0.06205 * 6 5 4 29 29 H 0.96701 * 113.99795 * 60.00305 * 12 10 9 30 30 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.10034 * 180.23729 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.1198 0.0000 4 6 3.5469 0.7693 0.0006 5 6 3.5947 -0.6948 0.0016 6 6 4.6301 -1.6319 0.0020 7 6 4.3367 -2.9671 0.0081 8 17 5.6238 -4.1320 0.0159 9 6 3.0161 -3.3990 0.0020 10 6 2.7140 -4.8754 0.0027 11 1 3.4657 -5.3998 0.5928 12 8 1.4221 -5.0969 0.5718 13 6 2.7352 -5.3931 -1.4123 14 1 2.9419 -4.7196 -2.2308 15 6 2.4855 -6.7259 -1.6626 16 7 2.2343 -7.5463 -0.6658 17 14 2.5043 -7.3661 -3.4173 18 1 3.8437 -7.1337 -4.0149 19 1 2.2078 -8.8213 -3.4164 20 1 1.4754 -6.6524 -4.2156 21 6 1.9804 -2.4910 0.0010 22 6 2.2564 -1.1274 0.0005 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8836 2.1354 -0.0007 27 1 4.3938 1.4396 0.0003 28 1 5.6587 -1.3030 0.0026 29 1 0.7027 -4.6587 0.0968 30 1 2.0591 -8.4839 -0.8419 31 1 0.9571 -2.8366 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259313707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = 5.507371 kcal Electronic energy + Delta-G solvation = -17533.771221 eV Core-core repulsion = 14613.660813 eV Total energy + Delta-G solvation = -2920.110408 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98832 -37.61535 -35.63345 -34.86134 -32.49627 -32.13042 -29.77089 -29.28708 -26.27093 -26.02196 -23.23808 -21.75522 -20.40355 -19.73107 -17.11743 -16.85243 -16.06886 -15.53770 -15.16122 -14.61216 -14.19919 -13.79496 -13.66173 -13.06856 -13.00481 -12.62973 -12.29393 -12.25965 -11.86934 -11.84783 -11.16644 -10.98495 -10.89075 -10.70884 -10.29160 -10.13511 -9.98100 -9.32263 -9.08613 -8.59711 -8.35639 -7.50982 -7.25090 -5.99178 -4.17032 1.51603 1.97960 2.89354 2.96382 3.07707 3.31359 3.35983 3.39363 4.25574 4.45057 4.79539 4.91617 5.09546 5.19475 5.26193 5.36745 5.47341 5.66853 5.80146 5.88565 6.07901 6.14166 6.35801 6.48501 6.68835 6.91619 7.03793 7.06229 7.47031 7.53859 7.74309 7.85599 8.12588 8.83300 9.29306 9.56638 11.04381 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.006891 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.965294 B = 4062.343500 C = 4730.510389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.491 5.491 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.122 4.122 6 C -0.072 4.072 7 C -0.045 4.045 8 Cl -0.069 7.069 9 C -0.041 4.041 10 C 0.259 3.741 11 H 0.082 0.918 12 O -0.559 6.559 13 C -0.554 4.554 14 H 0.057 0.943 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.126 4.126 22 C 0.104 3.896 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.163 0.837 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.343 0.657 30 H 0.262 0.738 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 15.265 1.307 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.175 5.175 3 C -0.087 4.087 4 C -0.226 4.226 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.072 4.072 8 Cl -0.040 7.040 9 C -0.043 4.043 10 C 0.201 3.799 11 H 0.099 0.901 12 O -0.362 6.362 13 C -0.591 4.591 14 H 0.075 0.925 15 C -0.124 4.124 16 N -0.495 5.495 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.147 4.147 22 C -0.001 4.001 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.180 0.820 27 H 0.160 0.840 28 H 0.143 0.857 29 H 0.188 0.812 30 H 0.072 0.928 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.914 14.641 1.805 14.780 hybrid contribution -0.217 -0.034 -1.478 1.494 sum -1.131 14.607 0.327 14.655 Atomic orbital electron populations 1.21892 0.77542 1.03998 1.02737 1.43760 1.05642 1.04329 1.63811 1.21644 0.90515 0.90826 1.05704 1.21547 0.95756 0.92666 1.12595 1.18890 0.91754 0.93193 1.08798 1.19980 0.98330 0.90125 1.00704 1.20132 0.89347 0.89414 1.08337 1.98333 1.49143 1.59482 1.97005 1.20989 0.90184 1.00275 0.92898 1.18628 0.83466 0.82853 0.94918 0.90087 1.86646 1.16740 1.76385 1.56435 1.21351 1.51730 0.94226 0.91830 0.92520 1.24993 0.93931 0.96693 0.96828 1.70060 1.44622 1.04228 1.30573 0.86715 0.78758 0.77744 0.85093 1.19988 1.21173 1.20203 1.19634 0.99546 0.87997 1.07488 1.18316 0.89938 0.88202 1.03644 0.91546 0.90353 0.89959 0.81993 0.84001 0.85739 0.81239 0.92850 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.03 59.85 0.66 1.45 16 2 N -0.49 -6.82 3.18 -121.80 -0.39 -7.21 16 3 C 0.04 0.46 11.29 -16.74 -0.19 0.27 16 4 C -0.20 -2.77 11.08 -37.67 -0.42 -3.19 16 5 C -0.12 -2.12 6.37 -105.14 -0.67 -2.79 16 6 C -0.07 -1.30 9.81 -39.61 -0.39 -1.69 16 7 C -0.04 -0.92 6.27 -39.87 -0.25 -1.17 16 8 Cl -0.07 -1.39 27.32 -51.86 -1.42 -2.81 16 9 C -0.04 -0.90 5.01 -104.55 -0.52 -1.43 16 10 C 0.26 6.61 2.56 -29.04 -0.07 6.54 16 11 H 0.08 2.28 7.07 -51.93 -0.37 1.91 16 12 O -0.56 -14.28 12.38 -35.23 -0.44 -14.71 16 13 C -0.55 -15.12 8.75 -34.44 -0.30 -15.42 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 16 N -0.86 -25.15 12.85 55.43 0.71 -24.44 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.13 -2.45 9.21 -39.43 -0.36 -2.81 16 22 C 0.10 1.84 6.81 -83.97 -0.57 1.26 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 26 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.34 7.63 7.29 45.56 0.33 7.96 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.12 2.21 6.37 -52.49 -0.33 1.88 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -32.05 285.50 -7.88 -39.93 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -2.44 Total: 5.43 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.19 Total: -16.80 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.32 Total: -31.64 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.44 Total: -14.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.42 Total: -2.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.05 -7.88 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259313707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.439 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds