Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36824 * 125.07092 * 2 1 4 4 C 1.34234 * 109.93295 * 179.97438 * 3 2 1 5 5 C 1.46484 * 107.00813 * 359.97438 * 4 3 2 6 6 C 1.39645 * 134.01984 * 179.97438 * 5 4 3 7 7 C 1.36712 * 119.75628 * 179.75554 * 6 5 4 8 8 Cl 1.73599 * 119.75076 * 180.27455 * 7 6 5 9 9 C 1.38936 * 120.50072 * 0.56361 * 7 6 5 10 10 C 1.50698 * 119.67521 * 179.73160 * 9 7 6 11 11 H 1.09001 * 109.46875 * 34.72454 * 10 9 7 12 12 O 1.42895 * 109.47114 * 154.72425 * 10 9 7 13 13 C 1.50697 * 109.46993 * 274.72775 * 10 9 7 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.37742 * 120.65081 * 359.45821 * 9 7 6 22 22 C 1.37739 * 125.06680 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47048 * 270.02631 * 1 2 3 24 24 H 1.08998 * 109.46766 * 30.02882 * 1 2 3 25 25 H 1.08999 * 109.47215 * 150.02293 * 1 2 3 26 26 H 1.08000 * 125.03198 * 359.95471 * 3 2 1 27 27 H 1.08001 * 126.49775 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.11744 * 0.06205 * 6 5 4 29 29 H 0.96701 * 113.99795 * 60.00305 * 12 10 9 30 30 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.10034 * 180.23729 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.1198 0.0000 4 6 3.5469 0.7693 0.0006 5 6 3.5947 -0.6948 0.0016 6 6 4.6301 -1.6319 0.0020 7 6 4.3367 -2.9671 0.0081 8 17 5.6238 -4.1320 0.0159 9 6 3.0161 -3.3990 0.0020 10 6 2.7140 -4.8754 0.0027 11 1 3.4657 -5.3998 0.5928 12 8 1.4221 -5.0969 0.5718 13 6 2.7352 -5.3931 -1.4123 14 1 2.9419 -4.7196 -2.2308 15 6 2.4855 -6.7259 -1.6626 16 7 2.2343 -7.5463 -0.6658 17 14 2.5043 -7.3661 -3.4173 18 1 3.8437 -7.1337 -4.0149 19 1 2.2078 -8.8213 -3.4164 20 1 1.4754 -6.6524 -4.2156 21 6 1.9804 -2.4910 0.0010 22 6 2.2564 -1.1274 0.0005 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.8836 2.1354 -0.0007 27 1 4.3938 1.4396 0.0003 28 1 5.6587 -1.3030 0.0026 29 1 0.7027 -4.6587 0.0968 30 1 2.0591 -8.4839 -0.8419 31 1 0.9571 -2.8366 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259313707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -14.972438 kcal Electronic energy + Delta-G solvation = -17534.659292 eV Core-core repulsion = 14613.660813 eV Total energy + Delta-G solvation = -2920.998479 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.19157 -39.16161 -37.33653 -36.43445 -34.28713 -33.63618 -31.08392 -30.83900 -28.09973 -27.01630 -24.99072 -23.15439 -21.85047 -20.96025 -19.09624 -18.15295 -17.39320 -17.16565 -16.66381 -16.18149 -15.74835 -15.36154 -14.99411 -14.60439 -14.25223 -14.11369 -13.76838 -13.28689 -13.22796 -13.15231 -12.96933 -12.86420 -12.78640 -12.15610 -12.12698 -11.78063 -11.48876 -11.06681 -10.73614 -10.48838 -10.32562 -8.93883 -8.49814 -8.09089 -6.35329 0.17043 0.53594 1.39588 1.41677 1.42743 1.49580 1.86299 1.99843 2.40133 2.86131 3.13777 3.74136 3.93759 4.00052 4.12949 4.19918 4.48804 4.52086 4.56578 4.71010 4.71607 4.76568 4.99895 5.11726 5.20103 5.38173 5.66187 5.68946 5.81838 5.88094 6.05578 6.24028 6.50063 6.71869 7.31478 7.48498 8.92800 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.006891 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.965294 B = 4062.343500 C = 4730.510389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.490 5.490 3 C 0.063 3.937 4 C -0.218 4.218 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.066 4.066 8 Cl -0.081 7.081 9 C -0.077 4.077 10 C 0.266 3.734 11 H 0.045 0.955 12 O -0.574 6.574 13 C -0.557 4.557 14 H 0.049 0.951 15 C 0.032 3.968 16 N -0.897 5.897 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.267 1.267 21 C -0.124 4.124 22 C 0.085 3.915 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.215 0.785 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.355 0.645 30 H 0.262 0.738 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 18.573 0.425 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.173 5.173 3 C -0.062 4.062 4 C -0.243 4.243 5 C -0.138 4.138 6 C -0.089 4.089 7 C -0.094 4.094 8 Cl -0.052 7.052 9 C -0.079 4.079 10 C 0.209 3.791 11 H 0.062 0.938 12 O -0.379 6.379 13 C -0.595 4.595 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.534 5.534 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.145 4.145 22 C -0.022 4.022 23 H 0.097 0.903 24 H 0.133 0.867 25 H 0.093 0.907 26 H 0.232 0.768 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.201 0.799 30 H 0.071 0.929 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.834 17.974 0.917 18.091 hybrid contribution -0.021 -0.836 -1.151 1.423 sum -1.855 17.139 -0.233 17.240 Atomic orbital electron populations 1.22223 0.75109 1.05541 1.04104 1.44148 1.07256 1.03547 1.62351 1.22509 0.89770 0.92187 1.01747 1.21928 0.97762 0.90795 1.13774 1.19409 0.91429 0.95287 1.07690 1.20201 0.99854 0.89175 0.99647 1.20245 0.88598 0.90277 1.10254 1.98311 1.49460 1.60266 1.97189 1.20611 0.91749 0.98501 0.97080 1.18225 0.82443 0.85238 0.93223 0.93764 1.86567 1.17393 1.77074 1.56864 1.21566 1.50959 0.94324 0.92664 0.93280 1.25776 0.93609 0.96940 1.00705 1.70187 1.46087 1.04460 1.32697 0.85721 0.78885 0.77311 0.80363 1.19767 1.20626 1.19173 1.19636 0.99056 0.89026 1.06745 1.18327 0.91198 0.88458 1.04183 0.90257 0.86684 0.90671 0.76838 0.81312 0.83614 0.79891 0.92865 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 11.03 127.77 1.41 2.52 16 2 N -0.49 -11.79 3.18 -539.25 -1.71 -13.50 16 3 C 0.06 1.19 11.29 83.00 0.94 2.13 16 4 C -0.22 -5.15 11.08 23.51 0.26 -4.89 16 5 C -0.13 -4.38 6.37 -20.20 -0.13 -4.51 16 6 C -0.07 -2.48 9.81 22.25 0.22 -2.26 16 7 C -0.07 -2.80 6.27 22.08 0.14 -2.66 16 8 Cl -0.08 -3.43 27.32 -2.72 -0.07 -3.51 16 9 C -0.08 -3.51 5.01 -19.82 -0.10 -3.61 16 10 C 0.27 14.24 2.56 29.10 0.07 14.32 16 11 H 0.04 2.66 7.07 -2.39 -0.02 2.64 16 12 O -0.57 -30.54 12.38 -148.98 -1.84 -32.38 16 13 C -0.56 -31.41 8.75 25.60 0.22 -31.18 16 14 H 0.05 2.78 7.74 -2.92 -0.02 2.75 16 15 C 0.03 1.83 5.40 84.66 0.46 2.29 16 16 N -0.90 -54.11 12.85 21.45 0.28 -53.83 16 17 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.12 -4.86 9.21 22.37 0.21 -4.66 16 22 C 0.09 2.87 6.81 39.02 0.27 3.13 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 26 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 29 H 0.36 16.37 7.29 -74.06 -0.54 15.83 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.13 4.67 6.37 -2.91 -0.02 4.65 16 Total: -1.00 -71.97 285.50 3.25 -68.72 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.62 Total: 17.49 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.96 Total: -29.39 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.44 Total: -67.34 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.84 Total: -32.38 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.51 kcal Total: -71.97 3.25 -68.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259313707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.748 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds