Wall clock time and date at job start Mon Mar 30 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48503 * 109.47419 * 270.00118 * 3 2 1 5 5 H 1.48496 * 109.47337 * 30.00338 * 3 2 1 6 6 H 1.48510 * 109.47166 * 150.00285 * 3 2 1 7 7 C 1.37874 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47596 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47146 * 54.99709 * 10 9 7 12 12 O 1.42903 * 109.46733 * 294.99970 * 10 9 7 13 13 C 1.50701 * 109.47256 * 175.00158 * 10 9 7 14 14 C 1.38833 * 119.67274 * 94.97876 * 13 10 9 15 15 C 1.36615 * 120.53377 * 179.97438 * 14 13 10 16 16 C 1.39666 * 119.78444 * 0.02562 * 15 14 13 17 17 C 1.46484 * 134.01340 * 179.97438 * 16 15 14 18 18 C 1.34243 * 106.99963 * 180.02562 * 17 16 15 19 19 N 1.36808 * 109.92859 * 0.02562 * 18 17 16 20 20 H 0.96994 * 125.07136 * 180.02562 * 19 18 17 21 21 C 1.37723 * 109.86423 * 359.76048 * 19 18 17 22 22 C 1.37853 * 119.66963 * 274.99853 * 13 10 9 23 23 Cl 1.73599 * 120.12194 * 359.95346 * 22 13 10 24 24 H 0.97008 * 119.99978 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47088 * 59.99521 * 9 7 2 26 26 H 1.09001 * 109.47023 * 299.99857 * 9 7 2 27 27 H 0.96700 * 114.00387 * 299.99966 * 12 10 9 28 28 H 1.07998 * 119.73025 * 0.02562 * 14 13 10 29 29 H 1.08002 * 120.10460 * 179.97438 * 15 14 13 30 30 H 1.08004 * 126.50306 * 0.06136 * 17 16 15 31 31 H 1.07999 * 125.03748 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8425 12 8 3.6439 -3.2751 1.2204 13 6 5.5234 -2.6384 -0.1254 14 6 6.3076 -2.7088 1.0181 15 6 7.6706 -2.7121 0.9257 16 6 8.2812 -2.6438 -0.3285 17 6 9.6736 -2.6260 -0.7831 18 6 9.6481 -2.5484 -2.1231 19 7 8.3533 -2.5145 -2.5636 20 1 8.0822 -2.4593 -3.4932 21 6 7.4921 -2.5763 -1.4906 22 6 6.1048 -2.5699 -1.3734 23 17 5.1108 -2.4831 -2.7940 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8912 27 1 3.9964 -2.8478 2.0130 28 1 5.8363 -2.7620 1.9883 29 1 8.2740 -2.7666 1.8198 30 1 10.5539 -2.6681 -0.1587 31 1 10.5204 -2.5174 -2.7591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259431343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:29 Heat of formation + Delta-G solvation = -4.515342 kcal Electronic energy + Delta-G solvation = -17400.687134 eV Core-core repulsion = 14480.142108 eV Total energy + Delta-G solvation = -2920.545026 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25752 -38.24660 -36.27874 -35.51593 -32.78331 -31.83605 -30.34789 -29.30562 -28.47114 -24.70152 -22.80868 -21.63338 -20.76353 -20.24133 -18.20098 -16.98600 -16.25334 -16.07295 -15.18906 -14.73871 -14.48602 -14.17314 -13.83536 -13.63275 -13.16809 -13.08918 -12.46711 -12.31366 -11.88230 -11.47194 -11.44515 -11.17978 -10.95758 -10.78009 -10.46015 -10.40370 -9.75768 -9.49628 -9.15645 -9.12515 -8.51519 -8.12920 -7.61830 -6.00259 -3.97504 1.05221 1.62366 2.37315 2.61522 3.03305 3.31673 3.39162 3.42286 3.85735 4.47104 4.65696 4.82685 4.98076 5.14467 5.18164 5.33830 5.36376 5.55029 5.69718 5.83196 5.86092 6.14193 6.39191 6.47394 6.57323 6.64283 6.71845 7.06054 7.06300 7.29488 7.39991 7.76333 8.36118 8.57415 9.08643 9.61186 11.13142 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.006178 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.238985 B = 4531.036067 C = 4735.288869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.078 0.922 9 C -0.032 4.032 10 C 0.154 3.846 11 H 0.109 0.891 12 O -0.547 6.547 13 C -0.067 4.067 14 C -0.129 4.129 15 C -0.066 4.066 16 C -0.110 4.110 17 C -0.202 4.202 18 C 0.047 3.953 19 N -0.591 5.591 20 H 0.416 0.584 21 C 0.106 3.894 22 C -0.047 4.047 23 Cl -0.066 7.066 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.364 0.636 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.266 -4.865 -2.855 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.545 4.545 8 H 0.097 0.903 9 C -0.070 4.070 10 C 0.095 3.905 11 H 0.126 0.874 12 O -0.351 6.351 13 C -0.070 4.070 14 C -0.148 4.148 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.227 4.227 18 C -0.079 4.079 19 N -0.194 5.194 20 H 0.253 0.747 21 C -0.002 4.002 22 C -0.077 4.077 23 Cl -0.037 7.037 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.211 0.789 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 19.703 -5.127 -3.533 20.664 hybrid contribution 0.558 1.476 -0.347 1.616 sum 20.261 -3.651 -3.880 20.950 Atomic orbital electron populations 1.69909 1.06171 1.26700 1.51312 1.24965 0.94672 0.98797 0.94824 0.86898 0.80410 0.84156 0.78562 1.20319 1.21322 1.19098 1.20987 0.88594 0.94734 1.50222 0.90350 1.20201 0.98308 0.91161 0.97318 1.20977 0.84967 0.96744 0.87799 0.87370 1.86597 1.76986 1.56321 1.15213 1.20710 0.99241 0.96387 0.90640 1.20417 0.93035 1.03350 0.98010 1.20288 0.94193 0.98382 0.95621 1.19105 0.92919 1.07408 0.92064 1.21640 0.94960 1.12408 0.93700 1.21784 0.86218 1.04266 0.95634 1.41759 1.04867 1.64783 1.07998 0.74674 1.17809 0.89628 1.04778 0.88022 1.19590 0.87077 1.12271 0.88731 1.98366 1.69776 1.96821 1.38734 0.92789 0.96220 0.95756 0.78870 0.84983 0.85555 0.83534 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.51 -14.57 9.43 -34.44 -0.32 -14.89 16 8 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 9 C -0.03 -0.78 3.71 -27.88 -0.10 -0.88 16 10 C 0.15 3.19 2.65 -27.88 -0.07 3.12 16 11 H 0.11 2.37 7.09 -51.93 -0.37 2.00 16 12 O -0.55 -11.03 12.74 -35.23 -0.45 -11.48 16 13 C -0.07 -1.20 5.07 -104.54 -0.53 -1.73 16 14 C -0.13 -1.95 9.23 -39.95 -0.37 -2.32 16 15 C -0.07 -0.89 10.05 -39.63 -0.40 -1.29 16 16 C -0.11 -1.54 6.37 -105.14 -0.67 -2.21 16 17 C -0.20 -2.19 11.08 -37.67 -0.42 -2.61 16 18 C 0.05 0.44 11.81 -16.74 -0.20 0.24 16 19 N -0.59 -6.74 6.07 -10.63 -0.06 -6.80 16 20 H 0.42 3.86 8.96 -40.82 -0.37 3.50 16 21 C 0.11 1.57 7.07 -83.95 -0.59 0.98 16 22 C -0.05 -0.80 6.33 -39.35 -0.25 -1.05 16 23 Cl -0.07 -1.11 27.14 -51.86 -1.41 -2.51 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.47 7.20 -51.92 -0.37 0.09 16 26 H 0.02 0.59 7.34 -51.93 -0.38 0.21 16 27 H 0.36 5.97 7.29 45.56 0.33 6.30 16 28 H 0.13 1.71 6.36 -52.49 -0.33 1.37 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -33.69 281.11 -7.95 -41.64 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.34 Total: 5.66 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -4.02 Total: -20.72 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.71 Total: -34.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.45 Total: -11.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.41 Total: -2.51 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.69 -7.95 -41.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259431343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.124 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds