Wall clock time and date at job start Mon Mar 30 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48503 * 109.47419 * 270.00118 * 3 2 1 5 5 H 1.48496 * 109.47337 * 30.00338 * 3 2 1 6 6 H 1.48510 * 109.47166 * 150.00285 * 3 2 1 7 7 C 1.37874 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00086 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00276 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47596 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47146 * 54.99709 * 10 9 7 12 12 O 1.42903 * 109.46733 * 294.99970 * 10 9 7 13 13 C 1.50701 * 109.47256 * 175.00158 * 10 9 7 14 14 C 1.38833 * 119.67274 * 94.97876 * 13 10 9 15 15 C 1.36615 * 120.53377 * 179.97438 * 14 13 10 16 16 C 1.39666 * 119.78444 * 0.02562 * 15 14 13 17 17 C 1.46484 * 134.01340 * 179.97438 * 16 15 14 18 18 C 1.34243 * 106.99963 * 180.02562 * 17 16 15 19 19 N 1.36808 * 109.92859 * 0.02562 * 18 17 16 20 20 H 0.96994 * 125.07136 * 180.02562 * 19 18 17 21 21 C 1.37723 * 109.86423 * 359.76048 * 19 18 17 22 22 C 1.37853 * 119.66963 * 274.99853 * 13 10 9 23 23 Cl 1.73599 * 120.12194 * 359.95346 * 22 13 10 24 24 H 0.97008 * 119.99978 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47088 * 59.99521 * 9 7 2 26 26 H 1.09001 * 109.47023 * 299.99857 * 9 7 2 27 27 H 0.96700 * 114.00387 * 299.99966 * 12 10 9 28 28 H 1.07998 * 119.73025 * 0.02562 * 14 13 10 29 29 H 1.08002 * 120.10460 * 179.97438 * 15 14 13 30 30 H 1.08004 * 126.50306 * 0.06136 * 17 16 15 31 31 H 1.07999 * 125.03748 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8425 12 8 3.6439 -3.2751 1.2204 13 6 5.5234 -2.6384 -0.1254 14 6 6.3076 -2.7088 1.0181 15 6 7.6706 -2.7121 0.9257 16 6 8.2812 -2.6438 -0.3285 17 6 9.6736 -2.6260 -0.7831 18 6 9.6481 -2.5484 -2.1231 19 7 8.3533 -2.5145 -2.5636 20 1 8.0822 -2.4593 -3.4932 21 6 7.4921 -2.5763 -1.4906 22 6 6.1048 -2.5699 -1.3734 23 17 5.1108 -2.4831 -2.7940 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8912 27 1 3.9964 -2.8478 2.0130 28 1 5.8363 -2.7620 1.9883 29 1 8.2740 -2.7666 1.8198 30 1 10.5539 -2.6681 -0.1587 31 1 10.5204 -2.5174 -2.7591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259431343.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:29 Heat of formation + Delta-G solvation = -28.238692 kcal Electronic energy + Delta-G solvation = -17401.715855 eV Core-core repulsion = 14480.142108 eV Total energy + Delta-G solvation = -2921.573747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22194 -39.58265 -37.58688 -36.79747 -34.93800 -33.04032 -31.92750 -30.35141 -29.83704 -26.37994 -23.88482 -23.30472 -21.74595 -21.53948 -19.31363 -18.91344 -17.67387 -17.31009 -16.59393 -16.31341 -15.70846 -15.59649 -15.25664 -14.92876 -14.58620 -14.17710 -14.00067 -13.71255 -13.30788 -12.93160 -12.89815 -12.68394 -12.35621 -12.30706 -12.09644 -11.94852 -11.71347 -11.24853 -10.86630 -10.77531 -10.42364 -9.21170 -8.62187 -8.27745 -6.30652 -0.02874 0.52042 1.14729 1.33124 1.33882 1.45679 1.77615 2.16197 2.34440 2.76016 3.05949 3.59927 3.69360 3.86625 4.05552 4.20766 4.24589 4.41113 4.62132 4.68904 4.78300 4.83131 5.00854 5.09198 5.22987 5.45123 5.55170 5.62598 5.70590 5.75324 6.06557 6.29208 6.60843 6.75875 6.92968 7.31782 8.89432 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.006178 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.238985 B = 4531.036067 C = 4735.288869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.514 4.514 8 H 0.032 0.968 9 C -0.024 4.024 10 C 0.166 3.834 11 H 0.084 0.916 12 O -0.561 6.561 13 C -0.094 4.094 14 C -0.140 4.140 15 C -0.060 4.060 16 C -0.120 4.120 17 C -0.215 4.215 18 C 0.066 3.934 19 N -0.589 5.589 20 H 0.425 0.575 21 C 0.083 3.917 22 C -0.059 4.059 23 Cl -0.080 7.080 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.380 0.620 28 H 0.148 0.852 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.382 -3.991 -2.687 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.552 4.552 8 H 0.050 0.950 9 C -0.061 4.061 10 C 0.106 3.894 11 H 0.102 0.898 12 O -0.368 6.368 13 C -0.096 4.096 14 C -0.159 4.159 15 C -0.078 4.078 16 C -0.126 4.126 17 C -0.239 4.239 18 C -0.060 4.060 19 N -0.192 5.192 20 H 0.263 0.737 21 C -0.026 4.026 22 C -0.088 4.088 23 Cl -0.051 7.051 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.230 0.770 28 H 0.165 0.835 29 H 0.178 0.822 30 H 0.193 0.807 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 23.843 -4.265 -3.368 24.455 hybrid contribution -0.640 1.094 -0.442 1.342 sum 23.203 -3.171 -3.810 23.727 Atomic orbital electron populations 1.70067 1.08174 1.27973 1.52901 1.25902 0.95524 1.03035 0.94395 0.85782 0.79667 0.78889 0.79098 1.19578 1.20605 1.16998 1.21220 0.91245 0.93035 1.49698 0.95003 1.20065 0.94876 0.93858 0.97323 1.20533 0.87482 0.94095 0.87260 0.89817 1.86547 1.77646 1.56666 1.15936 1.20390 0.97122 0.99877 0.92210 1.20620 0.93871 1.03685 0.97709 1.20644 0.93691 0.96592 0.96909 1.19649 0.94609 1.06400 0.91912 1.22042 0.94250 1.13002 0.94626 1.22608 0.86340 1.00992 0.96011 1.41940 1.05275 1.64062 1.07927 0.73700 1.17898 0.89126 1.05765 0.89829 1.19741 0.88090 1.12979 0.88030 1.98351 1.70403 1.96929 1.39422 0.92539 0.95403 0.95818 0.77029 0.83470 0.82237 0.80742 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.94 45.39 27.47 68.60 1.88 47.27 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.51 -30.61 9.43 25.60 0.24 -30.37 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C -0.02 -1.15 3.71 29.85 0.11 -1.04 16 10 C 0.17 7.04 2.65 29.85 0.08 7.12 16 11 H 0.08 3.89 7.09 -2.39 -0.02 3.87 16 12 O -0.56 -23.19 12.74 -148.98 -1.90 -25.08 16 13 C -0.09 -3.31 5.07 -19.81 -0.10 -3.41 16 14 C -0.14 -4.00 9.23 22.03 0.20 -3.80 16 15 C -0.06 -1.44 10.05 22.24 0.22 -1.22 16 16 C -0.12 -3.00 6.37 -20.20 -0.13 -3.13 16 17 C -0.22 -3.71 11.08 23.51 0.26 -3.45 16 18 C 0.07 0.93 11.81 83.00 0.98 1.92 16 19 N -0.59 -11.72 6.07 -187.55 -1.14 -12.86 16 20 H 0.42 6.86 8.96 -92.71 -0.83 6.03 16 21 C 0.08 2.31 7.07 39.04 0.28 2.58 16 22 C -0.06 -1.98 6.33 22.42 0.14 -1.84 16 23 Cl -0.08 -2.73 27.14 -2.72 -0.07 -2.80 16 24 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 25 H 0.03 1.30 7.20 -2.38 -0.02 1.28 16 26 H 0.02 1.15 7.34 -2.39 -0.02 1.13 16 27 H 0.38 12.47 7.29 -74.06 -0.54 11.93 16 28 H 0.15 3.57 6.36 -2.91 -0.02 3.55 16 29 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -75.78 281.11 1.58 -74.20 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.24 Total: 15.77 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.75 Total: -35.70 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -0.84 Total: -73.65 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.90 Total: -25.08 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.07 Total: -2.80 kcal Total: -75.78 1.58 -74.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259431343.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.957 kcal (2) G-P(sol) polarization free energy of solvation -75.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds