Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47363 * 239.99796 * 3 2 1 5 5 H 1.48495 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47383 * 119.99654 * 3 2 1 7 7 C 1.37876 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46857 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47486 * 304.99777 * 10 9 7 12 12 O 1.42907 * 109.47265 * 64.99982 * 10 9 7 13 13 C 1.50696 * 109.47371 * 184.99756 * 10 9 7 14 14 C 1.38835 * 119.67815 * 265.00522 * 13 10 9 15 15 C 1.36611 * 120.53888 * 179.74227 * 14 13 10 16 16 C 1.39662 * 119.78842 * 359.96924 * 15 14 13 17 17 C 1.46483 * 134.01821 * 179.97438 * 16 15 14 18 18 C 1.34251 * 107.00149 * 180.02562 * 17 16 15 19 19 N 1.36814 * 109.92398 * 0.02562 * 18 17 16 20 20 H 0.97003 * 125.06449 * 180.02562 * 19 18 17 21 21 C 1.37720 * 109.86613 * 359.97438 * 19 18 17 22 22 C 1.37861 * 119.67292 * 84.72314 * 13 10 9 23 23 Cl 1.73598 * 120.11808 * 0.26272 * 22 13 10 24 24 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47309 * 60.00152 * 9 7 2 26 26 H 1.08998 * 109.46963 * 299.99499 * 9 7 2 27 27 H 0.96697 * 113.99798 * 60.00074 * 12 10 9 28 28 H 1.08005 * 119.72579 * 359.71291 * 14 13 10 29 29 H 1.08004 * 120.10367 * 179.97438 * 15 14 13 30 30 H 1.07997 * 126.50004 * 0.05790 * 17 16 15 31 31 H 1.07998 * 125.03247 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 1 2.9300 -3.5556 -0.8395 12 8 2.9867 -3.6535 1.2235 13 6 1.4961 -4.9637 -0.1219 14 6 1.1647 -5.6775 1.0218 15 6 0.4812 -6.8568 0.9303 16 6 0.1116 -7.3492 -0.3233 17 6 -0.6050 -8.5434 -0.7770 18 6 -0.6621 -8.4817 -2.1169 19 7 -0.0400 -7.3458 -2.5581 20 1 0.0463 -7.0830 -3.4879 21 6 0.4442 -6.6306 -1.4855 22 6 1.1414 -5.4310 -1.3695 23 17 1.5623 -4.5270 -2.7904 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.4400 -3.7446 2.0159 28 1 1.4500 -5.2976 1.9917 29 1 0.2274 -7.4066 1.8247 30 1 -1.0111 -9.3251 -0.1521 31 1 -1.1297 -9.2193 -2.7521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259431348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = -8.619389 kcal Electronic energy + Delta-G solvation = -17329.732375 eV Core-core repulsion = 14409.009385 eV Total energy + Delta-G solvation = -2920.722990 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15291 -38.11592 -36.16033 -35.40488 -32.83415 -31.72613 -30.03954 -29.19588 -28.05389 -24.59307 -22.71593 -21.87192 -20.67399 -20.18455 -18.09465 -16.78607 -16.14981 -15.67293 -15.10131 -14.68313 -14.48383 -14.21125 -13.72313 -13.51463 -13.04952 -12.83238 -12.50538 -12.02914 -11.75645 -11.33652 -11.16309 -11.02357 -10.80955 -10.74853 -10.42963 -10.25905 -10.09323 -9.39824 -9.08952 -8.92049 -8.33996 -8.00865 -7.50355 -5.96366 -3.97564 1.16587 1.73782 2.49041 2.71072 3.12862 3.37869 3.41291 3.45142 3.97138 4.50036 4.75327 4.92787 5.09516 5.26858 5.28062 5.41264 5.46336 5.64777 5.80545 5.93267 5.98330 6.26728 6.56686 6.64635 6.68905 6.74689 6.86748 7.17209 7.49279 7.58838 7.66977 8.00461 8.38369 8.48916 9.08102 9.65356 11.14914 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.005544 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.188686 B = 5049.520636 C = 5422.378329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.005 3.995 10 C 0.143 3.857 11 H 0.103 0.897 12 O -0.553 6.553 13 C -0.062 4.062 14 C -0.128 4.128 15 C -0.067 4.067 16 C -0.111 4.111 17 C -0.202 4.202 18 C 0.046 3.954 19 N -0.592 5.592 20 H 0.416 0.584 21 C 0.106 3.894 22 C -0.047 4.047 23 Cl -0.067 7.067 24 H 0.260 0.740 25 H 0.031 0.969 26 H 0.020 0.980 27 H 0.365 0.635 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.146 0.854 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -16.994 -2.861 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.078 0.922 9 C -0.032 4.032 10 C 0.084 3.916 11 H 0.121 0.879 12 O -0.358 6.358 13 C -0.064 4.064 14 C -0.148 4.148 15 C -0.086 4.086 16 C -0.116 4.116 17 C -0.227 4.227 18 C -0.081 4.081 19 N -0.194 5.194 20 H 0.253 0.747 21 C -0.002 4.002 22 C -0.076 4.076 23 Cl -0.038 7.038 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.212 0.788 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.035 -16.717 -3.541 17.119 hybrid contribution -0.177 1.044 -0.319 1.106 sum -1.212 -15.672 -3.860 16.186 Atomic orbital electron populations 1.69962 1.06029 1.26663 1.51049 1.24992 0.94810 0.99185 0.95454 0.86636 0.79522 0.83032 0.78691 1.20287 1.21436 1.20172 1.21086 0.93222 0.90230 1.50156 0.92192 1.19707 0.93814 0.91287 0.98384 1.21252 0.93958 0.89172 0.87200 0.87904 1.86544 1.37495 1.96282 1.15448 1.20698 0.97224 0.97964 0.90558 1.20399 1.00938 0.95437 0.97984 1.20269 0.97129 0.95602 0.95573 1.19087 1.03988 0.96461 0.92087 1.21628 1.07861 0.99530 0.93694 1.21766 1.00294 0.90381 0.95615 1.41748 1.49881 1.19835 1.07973 0.74733 1.17808 1.00691 0.93681 0.87981 1.19566 1.06522 0.92786 0.88718 1.98357 1.92194 1.74535 1.38751 0.93021 0.95034 0.96206 0.78846 0.85110 0.85659 0.83603 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.46 8.88 -34.44 -0.31 -14.77 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 9 C 0.01 0.13 4.64 -27.88 -0.13 0.00 16 10 C 0.14 3.07 2.64 -27.89 -0.07 3.00 16 11 H 0.10 2.30 7.10 -51.93 -0.37 1.93 16 12 O -0.55 -11.36 12.74 -35.23 -0.45 -11.81 16 13 C -0.06 -1.16 5.07 -104.54 -0.53 -1.69 16 14 C -0.13 -2.07 9.23 -39.95 -0.37 -2.44 16 15 C -0.07 -0.97 10.05 -39.64 -0.40 -1.36 16 16 C -0.11 -1.66 6.37 -105.14 -0.67 -2.33 16 17 C -0.20 -2.35 11.08 -37.67 -0.42 -2.77 16 18 C 0.05 0.46 11.82 -16.73 -0.20 0.26 16 19 N -0.59 -7.22 6.07 -10.63 -0.06 -7.29 16 20 H 0.42 4.18 8.96 -40.82 -0.37 3.82 16 21 C 0.11 1.68 7.07 -83.95 -0.59 1.09 16 22 C -0.05 -0.83 6.33 -39.35 -0.25 -1.08 16 23 Cl -0.07 -1.18 27.12 -51.86 -1.41 -2.59 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.36 6.25 7.29 45.56 0.33 6.58 16 28 H 0.13 1.83 6.36 -52.48 -0.33 1.49 16 29 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -32.97 284.67 -8.32 -41.29 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.38 Total: 5.97 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -4.03 Total: -20.56 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.67 Total: -33.61 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.45 Total: -11.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.41 Total: -2.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.97 -8.32 -41.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259431348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.674 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds