Wall clock time and date at job start Mon Mar 30 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47363 * 239.99796 * 3 2 1 5 5 H 1.48495 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47383 * 119.99654 * 3 2 1 7 7 C 1.37876 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46857 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47486 * 304.99777 * 10 9 7 12 12 O 1.42907 * 109.47265 * 64.99982 * 10 9 7 13 13 C 1.50696 * 109.47371 * 184.99756 * 10 9 7 14 14 C 1.38835 * 119.67815 * 265.00522 * 13 10 9 15 15 C 1.36611 * 120.53888 * 179.74227 * 14 13 10 16 16 C 1.39662 * 119.78842 * 359.96924 * 15 14 13 17 17 C 1.46483 * 134.01821 * 179.97438 * 16 15 14 18 18 C 1.34251 * 107.00149 * 180.02562 * 17 16 15 19 19 N 1.36814 * 109.92398 * 0.02562 * 18 17 16 20 20 H 0.97003 * 125.06449 * 180.02562 * 19 18 17 21 21 C 1.37720 * 109.86613 * 359.97438 * 19 18 17 22 22 C 1.37861 * 119.67292 * 84.72314 * 13 10 9 23 23 Cl 1.73598 * 120.11808 * 0.26272 * 22 13 10 24 24 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47309 * 60.00152 * 9 7 2 26 26 H 1.08998 * 109.46963 * 299.99499 * 9 7 2 27 27 H 0.96697 * 113.99798 * 60.00074 * 12 10 9 28 28 H 1.08005 * 119.72579 * 359.71291 * 14 13 10 29 29 H 1.08004 * 120.10367 * 179.97438 * 15 14 13 30 30 H 1.07997 * 126.50004 * 0.05790 * 17 16 15 31 31 H 1.07998 * 125.03247 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 1 2.9300 -3.5556 -0.8395 12 8 2.9867 -3.6535 1.2235 13 6 1.4961 -4.9637 -0.1219 14 6 1.1647 -5.6775 1.0218 15 6 0.4812 -6.8568 0.9303 16 6 0.1116 -7.3492 -0.3233 17 6 -0.6050 -8.5434 -0.7770 18 6 -0.6621 -8.4817 -2.1169 19 7 -0.0400 -7.3458 -2.5581 20 1 0.0463 -7.0830 -3.4879 21 6 0.4442 -6.6306 -1.4855 22 6 1.1414 -5.4310 -1.3695 23 17 1.5623 -4.5270 -2.7904 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.4400 -3.7446 2.0159 28 1 1.4500 -5.2976 1.9917 29 1 0.2274 -7.4066 1.8247 30 1 -1.0111 -9.3251 -0.1521 31 1 -1.1297 -9.2193 -2.7521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259431348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:30 Heat of formation + Delta-G solvation = -30.853492 kcal Electronic energy + Delta-G solvation = -17330.696519 eV Core-core repulsion = 14409.009385 eV Total energy + Delta-G solvation = -2921.687133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.20348 -39.52603 -37.55152 -36.76780 -34.97590 -32.95623 -31.60106 -30.32444 -29.58386 -26.39972 -23.92278 -23.56020 -21.72957 -21.51627 -19.24732 -18.62641 -17.46986 -17.29364 -16.69318 -16.38421 -15.66721 -15.51580 -15.15430 -14.85888 -14.38165 -14.18603 -13.97937 -13.56270 -13.09335 -12.90185 -12.79978 -12.67788 -12.43725 -12.24359 -12.22759 -12.03513 -11.72937 -11.19229 -10.77136 -10.56479 -10.37945 -9.19259 -8.60478 -8.17710 -6.27160 -0.00381 0.53723 1.17290 1.39963 1.42830 1.50785 1.78717 2.17299 2.42306 2.78074 3.14738 3.63640 3.73349 3.89276 4.06986 4.22596 4.27002 4.48803 4.67297 4.78073 4.80945 4.85304 5.02460 5.32133 5.40027 5.50582 5.64044 5.72631 5.76211 5.79628 6.07660 6.23377 6.62065 6.84150 6.93489 7.40253 8.93306 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.005544 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.188686 B = 5049.520636 C = 5422.378329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.017 3.983 10 C 0.160 3.840 11 H 0.087 0.913 12 O -0.560 6.560 13 C -0.093 4.093 14 C -0.141 4.141 15 C -0.062 4.062 16 C -0.122 4.122 17 C -0.215 4.215 18 C 0.066 3.934 19 N -0.589 5.589 20 H 0.424 0.576 21 C 0.082 3.918 22 C -0.060 4.060 23 Cl -0.079 7.079 24 H 0.263 0.737 25 H 0.006 0.994 26 H -0.001 1.001 27 H 0.379 0.621 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.176 0.824 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -18.870 -2.823 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.021 4.021 10 C 0.101 3.899 11 H 0.105 0.895 12 O -0.367 6.367 13 C -0.095 4.095 14 C -0.161 4.161 15 C -0.080 4.080 16 C -0.128 4.128 17 C -0.239 4.239 18 C -0.060 4.060 19 N -0.192 5.192 20 H 0.263 0.737 21 C -0.027 4.027 22 C -0.089 4.089 23 Cl -0.051 7.051 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.017 0.983 27 H 0.228 0.772 28 H 0.163 0.837 29 H 0.177 0.823 30 H 0.193 0.807 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.483 -18.608 -3.507 18.994 hybrid contribution -0.112 1.478 -0.368 1.527 sum -1.595 -17.130 -3.875 17.635 Atomic orbital electron populations 1.70086 1.07586 1.27682 1.51877 1.25860 0.95680 1.02933 0.94903 0.85575 0.78337 0.78501 0.79089 1.19562 1.20712 1.19233 1.21429 0.93211 0.91789 1.50079 0.92693 1.19502 0.93977 0.92576 0.96012 1.20727 0.92638 0.89484 0.87052 0.89521 1.86485 1.37967 1.96343 1.15901 1.20461 0.99306 0.97599 0.92152 1.20606 1.01575 0.96198 0.97672 1.20634 0.95625 0.94828 0.96941 1.19650 1.03701 0.97531 0.91896 1.22040 1.08040 0.99182 0.94658 1.22617 0.97858 0.89527 0.95987 1.41930 1.49375 1.20034 1.07876 0.73731 1.17909 1.01361 0.93549 0.89867 1.19741 1.07324 0.93741 0.88110 1.98338 1.92374 1.75052 1.39287 0.92846 0.97551 0.98289 0.77233 0.83724 0.82276 0.80677 0.76518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.53 -30.82 8.88 25.60 0.23 -30.59 16 8 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 0.89 4.64 29.85 0.14 1.03 16 10 C 0.16 7.15 2.64 29.85 0.08 7.23 16 11 H 0.09 4.08 7.10 -2.39 -0.02 4.06 16 12 O -0.56 -23.53 12.74 -148.98 -1.90 -25.43 16 13 C -0.09 -3.58 5.07 -19.81 -0.10 -3.68 16 14 C -0.14 -4.51 9.23 22.03 0.20 -4.31 16 15 C -0.06 -1.68 10.05 22.23 0.22 -1.45 16 16 C -0.12 -3.39 6.37 -20.20 -0.13 -3.52 16 17 C -0.22 -4.18 11.08 23.51 0.26 -3.92 16 18 C 0.07 1.06 11.82 83.01 0.98 2.04 16 19 N -0.59 -13.10 6.07 -187.55 -1.14 -14.24 16 20 H 0.42 7.79 8.96 -92.71 -0.83 6.96 16 21 C 0.08 2.52 7.07 39.04 0.28 2.79 16 22 C -0.06 -2.19 6.33 22.42 0.14 -2.05 16 23 Cl -0.08 -2.90 27.12 -2.72 -0.07 -2.98 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.01 0.36 7.89 -2.39 -0.02 0.34 16 26 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.38 13.21 7.29 -74.06 -0.54 12.67 16 28 H 0.15 3.99 6.36 -2.91 -0.02 3.97 16 29 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -73.03 284.67 1.78 -71.25 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.19 Total: 16.61 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 2.76 Total: -35.74 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -0.85 Total: -71.35 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.90 Total: -25.43 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.98 kcal Total: -73.03 1.78 -71.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259431348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds