Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36018 * 117.00000 * 2 1 4 4 C 1.39224 * 119.87108 * 359.97438 * 3 2 1 5 5 C 1.37703 * 120.63291 * 180.02562 * 4 3 2 6 6 C 1.39110 * 120.01074 * 359.97438 * 5 4 3 7 7 N 1.37901 * 133.35246 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.07620 * 0.02562 * 7 6 5 9 9 C 1.36833 * 109.84782 * 179.74306 * 7 6 5 10 10 C 1.34234 * 109.92687 * 0.44590 * 9 7 6 11 11 C 1.50700 * 126.48334 * 179.83445 * 10 9 7 12 12 C 1.50702 * 109.46869 * 264.68656 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.40604 * 119.52788 * 0.02638 * 6 5 4 21 21 C 1.38141 * 119.87278 * 180.02562 * 3 2 1 22 22 Cl 1.73604 * 120.20199 * 0.02562 * 21 3 2 23 23 H 1.09001 * 109.46826 * 60.00388 * 1 2 3 24 24 H 1.09004 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47295 * 300.00150 * 1 2 3 26 26 H 1.08003 * 119.68673 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99610 * 180.02562 * 5 4 3 28 28 H 1.07999 * 125.03536 * 180.27890 * 9 7 6 29 29 H 1.09004 * 109.47210 * 144.68949 * 11 10 9 30 30 H 1.08994 * 109.47551 * 24.68602 * 11 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2856 2.3778 -0.0005 5 6 1.8944 3.6130 -0.0011 6 6 3.2825 3.7045 -0.0005 7 7 4.1611 4.7674 -0.0004 8 1 3.9045 5.7028 -0.0003 9 6 5.4491 4.3054 0.0060 10 6 5.4537 2.9631 0.0003 11 6 6.6684 2.0712 0.0008 12 6 7.0005 1.6739 -1.4144 13 1 6.3930 2.0318 -2.2325 14 6 8.0837 0.8585 -1.6655 15 7 8.3767 0.5162 -2.9010 16 14 9.1349 0.2400 -0.2506 17 1 8.5918 -1.0515 0.2418 18 1 10.5302 0.0436 -0.7196 19 1 9.1183 1.2360 0.8507 20 6 4.0544 2.5293 0.0000 21 6 3.4262 1.2812 -0.0005 22 17 4.3736 -0.1736 -0.0019 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2075 2.3130 -0.0005 27 1 1.2941 4.5108 -0.0011 28 1 6.3312 4.9285 0.0118 29 1 6.4629 1.1776 0.5903 30 1 7.5124 2.6069 0.4353 31 1 9.1385 -0.0577 -3.0776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259447619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = 15.011425 kcal Electronic energy + Delta-G solvation = -17489.823311 eV Core-core repulsion = 14570.125029 eV Total energy + Delta-G solvation = -2919.698281 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86616 -39.00693 -35.87902 -35.19280 -33.32800 -31.61939 -29.82182 -28.61972 -27.33677 -26.43868 -22.68190 -22.36767 -21.34977 -18.95542 -17.47321 -17.22601 -16.60030 -16.12798 -15.56909 -15.22769 -14.18892 -13.97763 -13.85755 -13.48674 -12.85600 -12.69666 -12.51635 -12.22725 -12.20089 -11.74797 -11.32053 -10.99191 -10.81748 -10.52573 -10.37921 -10.07843 -9.93988 -9.65286 -9.22592 -8.65310 -8.40043 -7.61100 -6.86316 -5.90389 -3.85676 1.28801 1.86666 2.93554 3.30244 3.39726 3.41789 3.46768 3.49574 3.62021 4.09646 4.56277 4.91342 5.07425 5.19874 5.21285 5.38741 5.47319 5.48214 5.51634 5.79423 5.91976 5.98358 6.32063 6.46985 6.52684 6.82150 7.13048 7.19840 7.40015 7.60352 7.66409 7.86986 7.99881 8.69742 9.16858 9.71808 11.23365 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.007619 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.924390 B = 3673.962301 C = 4598.083226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.309 6.309 3 C 0.087 3.913 4 C -0.174 4.174 5 C -0.100 4.100 6 C 0.076 3.924 7 N -0.600 5.600 8 H 0.410 0.590 9 C 0.027 3.973 10 C -0.100 4.100 11 C 0.043 3.957 12 C -0.492 4.492 13 H 0.071 0.929 14 C 0.069 3.931 15 N -0.905 5.905 16 Si 0.868 3.132 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C -0.063 4.063 21 C -0.008 4.008 22 Cl -0.037 7.037 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.132 0.868 27 H 0.122 0.878 28 H 0.169 0.831 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 5.823 7.873 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C 0.041 3.959 4 C -0.194 4.194 5 C -0.121 4.121 6 C -0.031 4.031 7 N -0.204 5.204 8 H 0.246 0.754 9 C -0.096 4.096 10 C -0.106 4.106 11 C 0.005 3.995 12 C -0.530 4.530 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.545 5.545 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.069 4.069 21 C -0.036 4.036 22 Cl -0.007 7.007 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.140 0.860 28 H 0.186 0.814 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.570 5.520 7.764 17.408 hybrid contribution 0.283 0.109 0.489 0.576 sum -14.287 5.629 8.254 17.433 Atomic orbital electron populations 1.22970 0.79219 1.03489 1.00825 1.86164 1.20475 1.26037 1.89564 1.18218 0.90090 0.84748 1.02872 1.20668 0.99239 0.90915 1.08601 1.19700 0.90431 0.97383 1.04563 1.18016 0.91051 0.87368 1.06672 1.41584 1.04877 1.06880 1.67092 0.75357 1.21610 0.85906 0.95005 1.07096 1.20732 0.92759 0.92780 1.04371 1.18291 0.89065 0.93583 0.98575 1.20884 1.11964 1.29243 0.90946 0.91103 1.24916 0.97204 0.95893 0.95072 1.69900 1.28693 1.37066 1.18804 0.86955 0.79890 0.80000 0.83622 1.20249 1.21530 1.18909 1.18690 0.94238 0.89678 1.04277 1.19474 0.88111 0.88214 1.07836 1.98385 1.71410 1.34492 1.96447 0.92999 0.88610 0.93101 0.84996 0.86037 0.81367 0.95115 0.95897 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.92 9.94 -19.80 -0.20 -5.11 16 3 C 0.09 1.51 6.67 -39.25 -0.26 1.24 16 4 C -0.17 -2.44 9.01 -39.41 -0.36 -2.80 16 5 C -0.10 -1.39 10.06 -39.45 -0.40 -1.78 16 6 C 0.08 1.28 7.27 -83.92 -0.61 0.67 16 7 N -0.60 -8.78 6.08 -10.62 -0.06 -8.84 16 8 H 0.41 4.24 8.96 -40.82 -0.37 3.87 16 9 C 0.03 0.47 11.73 -16.73 -0.20 0.28 16 10 C -0.10 -2.15 5.50 -102.71 -0.57 -2.72 16 11 C 0.04 1.04 3.95 -29.03 -0.11 0.93 16 12 C -0.49 -14.11 9.65 -34.44 -0.33 -14.44 16 13 H 0.07 2.25 7.98 -52.49 -0.42 1.83 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 16 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.06 -1.28 6.21 -105.12 -0.65 -1.94 16 21 C -0.01 -0.17 6.36 -39.06 -0.25 -0.41 16 22 Cl -0.04 -0.81 26.39 -51.86 -1.37 -2.18 16 23 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.13 1.38 6.26 -52.48 -0.33 1.05 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.17 2.46 8.06 -52.49 -0.42 2.03 16 29 H 0.03 0.77 6.06 -51.93 -0.31 0.45 16 30 H 0.02 0.55 7.19 -51.93 -0.37 0.17 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -34.05 280.62 -7.17 -41.22 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.03 Total: -1.42 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.84 Total: -17.73 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.71 Total: -36.40 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.20 Total: -5.11 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.37 Total: -2.18 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.05 -7.17 -41.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259447619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.229 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds