Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36018 * 117.00000 * 2 1 4 4 C 1.39224 * 119.87108 * 359.97438 * 3 2 1 5 5 C 1.37703 * 120.63291 * 180.02562 * 4 3 2 6 6 C 1.39110 * 120.01074 * 359.97438 * 5 4 3 7 7 N 1.37901 * 133.35246 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.07620 * 0.02562 * 7 6 5 9 9 C 1.36833 * 109.84782 * 179.74306 * 7 6 5 10 10 C 1.34234 * 109.92687 * 0.44590 * 9 7 6 11 11 C 1.50700 * 126.48334 * 179.83445 * 10 9 7 12 12 C 1.50702 * 109.46869 * 264.68656 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.40604 * 119.52788 * 0.02638 * 6 5 4 21 21 C 1.38141 * 119.87278 * 180.02562 * 3 2 1 22 22 Cl 1.73604 * 120.20199 * 0.02562 * 21 3 2 23 23 H 1.09001 * 109.46826 * 60.00388 * 1 2 3 24 24 H 1.09004 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47295 * 300.00150 * 1 2 3 26 26 H 1.08003 * 119.68673 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99610 * 180.02562 * 5 4 3 28 28 H 1.07999 * 125.03536 * 180.27890 * 9 7 6 29 29 H 1.09004 * 109.47210 * 144.68949 * 11 10 9 30 30 H 1.08994 * 109.47551 * 24.68602 * 11 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2856 2.3778 -0.0005 5 6 1.8944 3.6130 -0.0011 6 6 3.2825 3.7045 -0.0005 7 7 4.1611 4.7674 -0.0004 8 1 3.9045 5.7028 -0.0003 9 6 5.4491 4.3054 0.0060 10 6 5.4537 2.9631 0.0003 11 6 6.6684 2.0712 0.0008 12 6 7.0005 1.6739 -1.4144 13 1 6.3930 2.0318 -2.2325 14 6 8.0837 0.8585 -1.6655 15 7 8.3767 0.5162 -2.9010 16 14 9.1349 0.2400 -0.2506 17 1 8.5918 -1.0515 0.2418 18 1 10.5302 0.0436 -0.7196 19 1 9.1183 1.2360 0.8507 20 6 4.0544 2.5293 0.0000 21 6 3.4262 1.2812 -0.0005 22 17 4.3736 -0.1736 -0.0019 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2075 2.3130 -0.0005 27 1 1.2941 4.5108 -0.0011 28 1 6.3312 4.9285 0.0118 29 1 6.4629 1.1776 0.5903 30 1 7.5124 2.6069 0.4353 31 1 9.1385 -0.0577 -3.0776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259447619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = -8.213680 kcal Electronic energy + Delta-G solvation = -17490.830427 eV Core-core repulsion = 14570.125029 eV Total energy + Delta-G solvation = -2920.705397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14401 -40.17897 -37.30849 -36.48167 -35.28918 -33.38296 -31.28106 -29.84767 -28.83355 -27.57805 -24.46235 -23.81497 -22.56103 -20.35052 -18.83367 -18.77748 -18.46578 -17.33659 -16.62414 -16.39344 -16.20485 -15.26284 -15.22075 -14.81689 -14.64361 -14.10753 -13.85053 -13.71720 -13.46210 -13.42590 -12.81647 -12.40306 -12.33341 -12.18070 -11.95435 -11.72053 -11.47573 -11.33699 -11.26917 -10.65538 -10.13676 -8.87142 -8.24864 -8.16641 -6.17014 0.03166 0.61458 1.36405 1.38484 1.48913 1.52391 1.89763 2.28573 2.41739 2.50627 2.79815 3.17629 3.85611 4.03089 4.13739 4.29220 4.45255 4.50083 4.58318 4.63045 4.75686 4.80871 4.97867 5.13073 5.22632 5.26238 5.51904 5.63155 5.68673 5.88370 6.16609 6.43553 6.50167 6.84331 6.90660 7.43689 8.99300 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.007619 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.924390 B = 3673.962301 C = 4598.083226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.093 3.907 4 C -0.171 4.171 5 C -0.076 4.076 6 C 0.065 3.935 7 N -0.576 5.576 8 H 0.435 0.565 9 C 0.057 3.943 10 C -0.168 4.168 11 C 0.053 3.947 12 C -0.482 4.482 13 H 0.022 0.978 14 C 0.009 3.991 15 N -0.955 5.955 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.240 1.240 20 C -0.096 4.096 21 C -0.059 4.059 22 Cl -0.077 7.077 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.177 0.823 27 H 0.172 0.828 28 H 0.197 0.803 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 8.147 9.497 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.046 3.954 4 C -0.190 4.190 5 C -0.096 4.096 6 C -0.043 4.043 7 N -0.182 5.182 8 H 0.276 0.724 9 C -0.069 4.069 10 C -0.175 4.175 11 C 0.015 3.985 12 C -0.520 4.520 13 H 0.041 0.959 14 C -0.186 4.186 15 N -0.597 5.597 16 Si 0.755 3.245 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.163 1.163 20 C -0.102 4.102 21 C -0.087 4.087 22 Cl -0.048 7.048 23 H 0.086 0.914 24 H 0.131 0.869 25 H 0.091 0.909 26 H 0.194 0.806 27 H 0.189 0.811 28 H 0.214 0.786 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.011 7.891 9.406 20.979 hybrid contribution 0.778 -0.537 -0.066 0.948 sum -16.233 7.354 9.340 20.121 Atomic orbital electron populations 1.23370 0.76214 1.05431 1.02592 1.86146 1.23645 1.25989 1.89198 1.18487 0.89338 0.86400 1.01127 1.21175 1.01156 0.89602 1.07084 1.20282 0.89334 0.99198 1.00785 1.18304 0.92221 0.86475 1.07305 1.41483 1.03584 1.07849 1.65292 0.72422 1.21894 0.87751 0.93952 1.03283 1.20580 0.92532 0.94371 1.09974 1.18008 0.91095 0.94098 0.95263 1.21043 1.10596 1.28261 0.92099 0.95946 1.25773 0.98870 0.96325 0.97643 1.70059 1.29807 1.38600 1.21257 0.85936 0.77967 0.79701 0.80857 1.20407 1.20815 1.16341 1.18938 0.94470 0.91186 1.05568 1.19805 0.89360 0.87071 1.12465 1.98344 1.72723 1.36761 1.96970 0.91407 0.86904 0.90881 0.80614 0.81062 0.78626 0.96138 0.95193 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.37 9.94 -93.75 -0.93 -11.30 16 3 C 0.09 3.11 6.67 22.48 0.15 3.26 16 4 C -0.17 -4.10 9.01 22.38 0.20 -3.89 16 5 C -0.08 -1.74 10.06 22.35 0.22 -1.52 16 6 C 0.06 2.00 7.27 38.98 0.28 2.28 16 7 N -0.58 -14.98 6.08 -187.52 -1.14 -16.12 16 8 H 0.43 6.98 8.96 -92.71 -0.83 6.15 16 9 C 0.06 1.89 11.73 83.00 0.97 2.86 16 10 C -0.17 -7.30 5.50 -18.63 -0.10 -7.40 16 11 C 0.05 2.68 3.95 29.10 0.12 2.79 16 12 C -0.48 -28.90 9.65 25.60 0.25 -28.65 16 13 H 0.02 1.51 7.98 -2.91 -0.02 1.49 16 14 C 0.01 0.57 5.47 84.66 0.46 1.04 16 15 N -0.95 -62.40 13.96 21.45 0.30 -62.11 16 16 Si 0.93 46.58 27.47 68.60 1.88 48.47 16 17 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.24 -10.97 6.54 99.48 0.65 -10.32 16 20 C -0.10 -3.94 6.21 -20.19 -0.13 -4.06 16 21 C -0.06 -2.47 6.36 22.61 0.14 -2.32 16 22 Cl -0.08 -3.58 26.39 -2.72 -0.07 -3.65 16 23 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 24 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.07 0.96 7.65 -2.39 -0.02 0.94 16 26 H 0.18 2.61 6.26 -2.91 -0.02 2.59 16 27 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.20 5.18 8.06 -2.91 -0.02 5.15 16 29 H 0.02 1.06 6.06 -2.38 -0.01 1.04 16 30 H 0.03 1.42 7.19 -2.39 -0.02 1.41 16 31 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -80.60 280.62 4.01 -76.58 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 0.29 Total: 2.31 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.69 Total: -34.19 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -0.84 Total: -78.22 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.93 Total: -11.30 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.07 Total: -3.65 kcal Total: -80.60 4.01 -76.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259447619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.370 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds